xiaoyeye / TFvelo

Related projects ⓘ

Alternatives and complementary repositories for TFvelo

• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆56Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆40Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆56Updated 3 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆49Updated 7 months ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆20Updated 2 weeks ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆38Updated last year
• Roy-lab / scMTNI
  ☆21Updated 6 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆38Updated last year
• KChen-lab / METAFlux
  ☆48Updated 4 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 6 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆31Updated 3 years ago
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆17Updated 2 years ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated 10 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆66Updated this week
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆34Updated 8 months ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆38Updated 3 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆37Updated 2 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• snehamitra / SCARlink
  ☆37Updated 2 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆27Updated 5 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆25Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated 2 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆27Updated 3 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 3 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆34Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆25Updated last month
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆37Updated last year
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆26Updated 10 months ago