Alternatives and similar repositories for TFvelo

Users that are interested in TFvelo are comparing it to the libraries listed below

• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆69Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆100Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 4 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆82Updated 9 months ago
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆63Updated 3 weeks ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆87Updated last year
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• snehamitra / SCARlink
  ☆62Updated last month
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆29Updated 4 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆54Updated 2 weeks ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 11 months ago
• YMa-lab / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated last year
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆62Updated last year
• data2intelligence / CytoSig
  ☆60Updated 3 weeks ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆26Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last month
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 5 years ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆58Updated 2 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆40Updated 4 years ago
• SchubertLab / mvTCR
  ☆56Updated last year
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆32Updated last month
• YosefLab / velovi
  ☆41Updated 3 weeks ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated 6 months ago
• WanluLiuLab / scAtlasVAE
  ☆41Updated 7 months ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆20Updated 2 months ago