Alternatives and similar repositories for BPCells

Users that are interested in BPCells are comparing it to the libraries listed below

• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆184Updated 3 weeks ago
• huayc09 / SeuratExtend
  ☆171Updated this week
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 10 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆184Updated last month
• neurorestore / Libra
  ☆174Updated 4 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆195Updated 2 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆188Updated 10 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆205Updated last month
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆173Updated 2 years ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆290Updated last month
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆118Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆199Updated 4 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆214Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆188Updated 3 weeks ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆189Updated 10 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆207Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆167Updated last year
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆167Updated 5 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆291Updated 2 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆146Updated 3 years ago
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆204Updated 3 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆166Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆235Updated 3 weeks ago
• Irrationone / cellassign
  Automated, probabilistic assignment of cell types in scRNA-seq data
  ☆205Updated 2 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆181Updated last year
• farrellja / URD
  URD - Reconstruction of Branching Developmental Trajectories
  ☆124Updated 4 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆159Updated last month