Scaling Single Cell Analysis to Millions of Cells
☆301Jul 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for BPCells
Users that are interested in BPCells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- Fast Wilcoxon and auROC☆216May 5, 2026Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆306Jun 30, 2026Updated last month
- AnnData interoperability in R☆194Aug 3, 2026Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆475Jan 22, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BANKSY: spatial clustering☆158May 30, 2026Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆390Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆105Apr 16, 2026Updated 3 months ago
- R toolkit for single cell genomics☆2,783Jul 14, 2026Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆557Mar 21, 2025Updated last year
- reticulate-free single cell format conversion☆218Jul 10, 2026Updated last month
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆125May 26, 2026Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆336Nov 1, 2022Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆646Mar 4, 2026Updated 5 months ago
- Spatial omics analysis toolbox☆387Jul 31, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 2 months ago
- Community-provided extensions to Seurat☆370Jun 29, 2026Updated last month
- Spatial Single Cell Analysis in Python☆589Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 3 months ago
- R toolkit for the analysis of single-cell chromatin data☆424Updated this week
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆132Updated this week
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆462Feb 18, 2025Updated last year
- ☆463May 26, 2026Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆410Jun 16, 2026Updated last month
- ☆224Jun 13, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast, sensitive and accurate integration of single-cell data with Harmony☆667Jun 5, 2026Updated 2 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆309Jun 17, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆258Mar 14, 2026Updated 4 months ago
- Latent Embedding Multivariate Regression☆102Jul 29, 2026Updated last week
- ☆227May 6, 2024Updated 2 years ago