Alternatives and similar repositories for BPCells:

Users that are interested in BPCells are comparing it to the libraries listed below

• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆157Updated last month
• neurorestore / Libra
  ☆159Updated 4 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆171Updated this week
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆108Updated 4 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆187Updated 5 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆175Updated last week
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆119Updated 2 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆155Updated last year
• ncborcherding / escape
  Easy single cell analysis platform for enrichment
  ☆157Updated last month
• huayc09 / SeuratExtend
  ☆115Updated this week
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 2 years ago
• quadbio / Pando
  Multiome GRN inference.
  ☆115Updated 8 months ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆176Updated 3 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆153Updated 6 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆120Updated 7 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆133Updated this week
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆95Updated this week
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆109Updated last month
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆263Updated 2 years ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆157Updated 11 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆236Updated 2 weeks ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆174Updated 2 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆106Updated 2 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆182Updated last week
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆173Updated 2 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 2 months ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆162Updated 6 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆182Updated 4 months ago