Scaling Single Cell Analysis to Millions of Cells
☆273Jan 13, 2026Updated 2 months ago
Alternatives and similar repositories for BPCells
Users that are interested in BPCells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Updated this week
- Fast Wilcoxon and auROC☆207Nov 8, 2024Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- BANKSY: spatial clustering☆139Oct 15, 2025Updated 5 months ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for detecting doublets in single-cell RNA sequencing data☆538Mar 21, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆241Feb 12, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 2 months ago
- Conversion between scRNA-seq objects☆204Jan 12, 2026Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- reticulate-free single cell format conversion☆213Mar 16, 2026Updated 3 weeks ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆120Mar 17, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆462Feb 20, 2026Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆184Mar 27, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆123Updated this week
- Reference mapping for single-cell genomics☆401Mar 21, 2026Updated 2 weeks ago
- Latent Embedding Multivariate Regression☆101Mar 20, 2026Updated 3 weeks ago
- AnnData interoperability in R☆167Apr 2, 2026Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆446Feb 18, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆631Mar 23, 2026Updated 2 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- Community-provided extensions to Seurat☆359Feb 17, 2026Updated last month
- Spatial omics analysis toolbox☆368Apr 3, 2026Updated last week
- R toolkit for the analysis of single-cell chromatin data☆411Updated this week
- A tool for semi-automatic cell type classification☆464Mar 21, 2026Updated 2 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆59Aug 17, 2024Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆244Mar 14, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Spatial Single Cell Analysis in Python☆560Updated this week
- ☆224May 6, 2024Updated last year
- R toolkit for single cell genomics☆2,699Mar 31, 2026Updated last week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆254Jan 10, 2026Updated 3 months ago
- CellRank: dynamics from multi-view single-cell data☆437Updated this week
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆26Dec 7, 2024Updated last year
- Assessing the purity of single cell population☆144Jun 3, 2022Updated 3 years ago