bnprks / BPCells
Scaling Single Cell Analysis to Millions of Cells
☆149Updated this week
Related projects: ⓘ
- Conversion between scRNA-seq objects☆146Updated 2 months ago
- ☆144Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆145Updated 2 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆150Updated 3 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆112Updated 2 weeks ago
- reticulate-free single cell format conversion☆75Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆147Updated last year
- scDIOR: Single cell data IO softwaRe☆130Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆201Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆90Updated last week
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆146Updated 3 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆160Updated 2 months ago
- ☆82Updated 2 weeks ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆129Updated 2 years ago
- Tools for single-cell data processing☆117Updated 3 months ago
- Easy single cell analysis platform for enrichment☆141Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆106Updated 5 months ago
- Gene set scoring for single-cell data☆133Updated 4 months ago
- A tool for detecting somatic variants in single cell data☆152Updated this week
- Latent Embedding Multivariate Regression☆80Updated 3 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆116Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆172Updated this week
- R package to visualize gene expression data based on weighted kernel density estimation☆76Updated 6 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆170Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆153Updated 7 months ago
- Multiome GRN inference.☆108Updated 5 months ago
- Interactively analyze single cell genomic data☆174Updated 2 weeks ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 2 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆81Updated 3 years ago