Scaling Single Cell Analysis to Millions of Cells
☆307Jul 13, 2026Updated 2 months ago
Alternatives and similar repositories for BPCells
Users that are interested in BPCells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast Wilcoxon and auROC☆218Sep 20, 2026Updated 2 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆272Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆312Jun 30, 2026Updated 3 months ago
- AnnData interoperability in R☆199Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆488Jan 22, 2026Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BANKSY: spatial clustering☆166Sep 29, 2026Updated last week
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆400Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 5 months ago
- R toolkit for single cell genomics☆2,804Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆570Mar 21, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- reticulate-free single cell format conversion☆221Jul 10, 2026Updated 3 months ago
- A tool for semi-automatic cell type classification☆510May 22, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆126May 26, 2026Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆344Nov 1, 2022Updated 3 years ago
- Spatial omics analysis toolbox☆392Updated this week
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆676Mar 4, 2026Updated 7 months ago
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- Community-provided extensions to Seurat☆372Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial Single Cell Analysis in Python☆601Updated this week
- Reference mapping for single-cell genomics☆412Jun 26, 2026Updated 3 months ago
- R toolkit for the analysis of single-cell chromatin data☆429Sep 11, 2026Updated 3 weeks ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆134Updated this week
- A toolkit for single-cell immune profiling☆376Sep 25, 2026Updated 2 weeks ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆465Feb 18, 2025Updated last year
- ☆468Sep 22, 2026Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated 3 weeks ago
- ☆231Jun 13, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Jun 5, 2026Updated 4 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆295Sep 15, 2026Updated 3 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆315Jun 17, 2025Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆262Mar 14, 2026Updated 6 months ago
- Latent Embedding Multivariate Regression☆103Jul 29, 2026Updated 2 months ago
- ☆226May 6, 2024Updated 2 years ago