Alternatives and similar repositories for BPCells:

Users that are interested in BPCells are comparing it to the libraries listed below

• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆164Updated this week
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆131Updated 3 months ago
• neurorestore / Libra
  ☆162Updated 6 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆113Updated 6 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆196Updated 7 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆178Updated last month
• huayc09 / SeuratExtend
  ☆127Updated 3 weeks ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆137Updated 3 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆266Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆184Updated this week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆185Updated last month
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆140Updated 2 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆156Updated 8 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆122Updated 4 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆182Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆144Updated 4 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆100Updated last month
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆247Updated this week
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆193Updated 6 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆176Updated 4 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆122Updated 9 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆165Updated this week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆226Updated last year
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆175Updated 4 months ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆169Updated 8 months ago
• sunduanchen / Scissor
  Scissor package
  ☆211Updated 10 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 11 months ago
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆128Updated 4 months ago