Scaling Single Cell Analysis to Millions of Cells
☆290Jun 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for BPCells
Users that are interested in BPCells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302Updated this week
- Fast Wilcoxon and auROC☆213May 5, 2026Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 months ago
- BANKSY: spatial clustering☆152May 30, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R package for detecting doublets in single-cell RNA sequencing data☆552Mar 21, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆254Jun 23, 2026Updated last week
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆465Jan 22, 2026Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- reticulate-free single cell format conversion☆219Mar 16, 2026Updated 3 months ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆124May 26, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆330Nov 1, 2022Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 4 months ago
- A Shiny web app for mapping datasets using Seurat v4☆147May 22, 2026Updated last month
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆126Jun 4, 2026Updated 3 weeks ago
- Reference mapping for single-cell genomics☆406Updated this week
- Latent Embedding Multivariate Regression☆102May 19, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- AnnData interoperability in R☆188Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆458Feb 18, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast, sensitive and accurate integration of single-cell data with Harmony☆661Jun 5, 2026Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆302Jun 17, 2025Updated last year
- Community-provided extensions to Seurat☆365Feb 17, 2026Updated 4 months ago
- Spatial omics analysis toolbox☆378Jun 2, 2026Updated 3 weeks ago
- R toolkit for the analysis of single-cell chromatin data☆420Jun 20, 2026Updated last week
- A tool for semi-automatic cell type classification☆491May 22, 2026Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆256Mar 14, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spatial Single Cell Analysis in Python☆578Updated this week
- ☆226May 6, 2024Updated 2 years ago
- R toolkit for single cell genomics☆2,757Updated this week
- CellRank: dynamics from multi-view single-cell data☆453Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 5 months ago
- NicheNet: predict active ligand-target links between interacting cells☆661Jun 1, 2026Updated 3 weeks ago
- Assessing the purity of single cell population☆151Jun 3, 2022Updated 4 years ago