Alternatives and similar repositories for BPCells

Users that are interested in BPCells are comparing it to the libraries listed below

• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆187Updated last month
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆193Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 11 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆209Updated last month
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆189Updated 10 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆187Updated 2 weeks ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆176Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆218Updated last year
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆189Updated 10 months ago
• huayc09 / SeuratExtend
  ☆173Updated 3 weeks ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆203Updated 2 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆208Updated last month
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆168Updated 6 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• neurorestore / Libra
  ☆176Updated 5 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆195Updated 2 months ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆194Updated 5 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆293Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆165Updated this week
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆157Updated last month
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆208Updated 4 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆230Updated 2 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆169Updated last year
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆167Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆127Updated last year
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆148Updated 3 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆202Updated last year
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆215Updated last year
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆252Updated 2 years ago