JiekaiLab / scDIORLinks
scDIOR: Single cell data IO softwaRe
☆150Updated 3 years ago
Alternatives and similar repositories for scDIOR
Users that are interested in scDIOR are comparing it to the libraries listed below
Sorting:
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆168Updated 2 years ago
- reticulate-free single cell format conversion☆193Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆168Updated 3 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆135Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- A tool for detecting somatic variants in single cell data☆215Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆191Updated 2 weeks ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆121Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolution☆147Updated 4 months ago
- A tool for semi-automatic cell type harmonization and integration☆114Updated last week
- A Bayesian model for compositional single-cell data analysis☆180Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆138Updated 4 months ago
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- Gene set scoring for single-cell data☆170Updated 2 weeks ago
- Conversion between scRNA-seq objects☆191Updated this week
- Detect doublets in single-cell RNA-seq data☆158Updated 4 years ago
- ☆177Updated 6 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆224Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆218Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated 2 weeks ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Clustering scRNAseq by genotypes☆189Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆148Updated 3 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 8 months ago
- ☆188Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆169Updated 7 months ago