tutorials for spateo package
☆20Dec 25, 2024Updated last year
Alternatives and similar repositories for spateo-tutorials
Users that are interested in spateo-tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Jan 23, 2024Updated 2 years ago
- Spatiotemporal modeling of spatial transcriptomics☆332Feb 25, 2026Updated 3 weeks ago
- ☆19May 5, 2024Updated last year
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆15Dec 23, 2025Updated 3 months ago
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆23Dec 9, 2024Updated last year
- ☆13Nov 9, 2022Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 8 months ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- The scripts used for the analyses in TOME project☆24Nov 28, 2025Updated 3 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- ☆13Jun 6, 2024Updated last year
- ☆22Apr 27, 2023Updated 2 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 2 months ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Apr 8, 2024Updated last year
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆25Dec 26, 2023Updated 2 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- A toolkit of spatial transcriptomic analysis.☆274Updated this week
- ☆27Jun 4, 2023Updated 2 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- ☆13Mar 29, 2024Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- Static plotting for spatialdata☆75Updated this week
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 7 months ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 9 months ago
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆24May 13, 2025Updated 10 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- ☆10May 31, 2022Updated 3 years ago
- CAST package☆43Oct 26, 2024Updated last year