Alternatives and similar repositories for spateo-tutorials

Users that are interested in spateo-tutorials are comparing it to the libraries listed below

• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆20Updated last year
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆24Updated 9 months ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆21Updated 3 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 5 months ago
• jeongdo801 / scNOVA
  scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
  ☆11Updated 2 years ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 3 months ago
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆26Updated 11 months ago
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆19Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• wenweixiong / MARVEL
  ☆51Updated last year
• ejarmand / comparative_epigenomic_motor_cortex
  ☆10Updated 8 months ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆17Updated 9 months ago
• p4rkerw / Muto_Wilson_NComm_2020
  Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
  ☆24Updated 2 years ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆18Updated 5 months ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• gxiaolab / scAllele
  ☆38Updated this week
• WanluLiuLab / scAtlasVAE
  ☆37Updated 2 months ago
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 9 months ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated 3 months ago
• aertslab / scATAC-seq_benchmark
  ☆17Updated last year
• inmybrain / SClineager
  SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers
  ☆10Updated last year
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated 11 months ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• epigen / dea_seurat
  A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…
  ☆23Updated 2 months ago
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• McGranahanLab / ImmuneLENS
  ☆14Updated 6 months ago