Alternatives and similar repositories for spateo-tutorials

Users that are interested in spateo-tutorials are comparing it to the libraries listed below

• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆20Updated 3 years ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆24Updated 7 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 3 months ago
• liuqivandy / SpaGene
  ☆23Updated 2 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• jeongdo801 / scNOVA
  scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
  ☆11Updated last year
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated last month
• epigen / dea_seurat
  A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…
  ☆23Updated 3 weeks ago
• inmybrain / SClineager
  SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers
  ☆10Updated last year
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• UPSUTER / GEMLI
  ☆32Updated 5 months ago
• cliffzhou92 / STT
  ☆19Updated last year
• McGranahanLab / ImmuneLENS
  ☆14Updated 4 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• WanluLiuLab / scAtlasVAE
  ☆36Updated 3 weeks ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 7 months ago
• KellisLab / AD_regulome_analysis
  AD regulome analysis
  ☆12Updated 2 years ago
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• gxiaolab / scAllele
  ☆35Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 10 months ago
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆18Updated 2 months ago
• sottorivalab / EPICC2021_data_analysis_EPIGENOME
  Scripts used to analyse EPICC ATAC-Seq data
  ☆9Updated 2 years ago
• haoshijie13 / LISTA
  Codes used in LISTA project.
  ☆11Updated last year
• mattjones315 / KPTracer-release
  Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"
  ☆12Updated 2 years ago