Starlitnightly / omicverseLinks
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
☆660Updated this week
Alternatives and similar repositories for omicverse
Users that are interested in omicverse are comparing it to the libraries listed below
Sorting:
- A list of scRNA-seq analysis tools☆703Updated 2 weeks ago
- 单细胞分析的中文pipeline☆222Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆511Updated last year
- Papers with code for single cell related papers☆287Updated last year
- scripts and notebooks from sanbomics☆420Updated 7 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆422Updated 2 months ago
- ☆567Updated 4 years ago
- ☆601Updated 2 months ago
- https://www.sc-best-practices.org☆929Updated last week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆514Updated last year
- This is the alpha version of the CellOracle package☆361Updated 5 months ago
- A package to help convert different single-cell data formats to each other☆428Updated last year
- Graph-linked unified embedding for single-cell multi-omics data integration☆415Updated last week
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆495Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆579Updated 7 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆399Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆548Updated 3 weeks ago
- A tool for semi-automatic cell type classification☆375Updated last month
- Gene Set Enrichment Analysis in Python☆639Updated 3 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆477Updated 3 months ago
- Inferring CNV from Single-Cell RNA-Seq☆621Updated 4 months ago
- ☆319Updated last month
- scRNAseq analysis notes from Ming Tang☆712Updated 6 months ago
- One-step to Cluster and Visualize Gene Expression Matrix☆306Updated this week
- Useful functions to make your scRNA-seq plot more cool!☆344Updated last month
- Collections of library structure and sequence of popular single cell genomic methods☆468Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆704Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆375Updated last month
- tools and notes for spatial omics☆302Updated 4 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆456Updated last year