saezlab / CollecTRI
Gene regulatory network containing signed transcription factor-target gene interactions
☆73Updated 10 months ago
Alternatives and similar repositories for CollecTRI:
Users that are interested in CollecTRI are comparing it to the libraries listed below
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- scWGCNA☆58Updated 2 years ago
- ☆30Updated 2 months ago
- ☆40Updated 3 years ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- Normalize CITEseq Data☆65Updated 9 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Unified access to several second-generation deconvolution methods☆66Updated last week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- Pan-Cancer Single Cell Classifier☆66Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆25Updated this week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- ☆29Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 3 weeks ago
- ☆61Updated 8 months ago
- ☆50Updated 7 months ago