Gene regulatory network containing signed transcription factor-target gene interactions
☆115May 27, 2025Updated last year
Alternatives and similar repositories for CollecTRI
Users that are interested in CollecTRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆105Apr 16, 2026Updated 3 months ago
- ☆35Jun 11, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆89Mar 19, 2026Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated 11 months ago
- Methods to discover gene programs on single-cell data☆203Jul 21, 2026Updated 3 weeks ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆99Nov 30, 2023Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆264Jul 8, 2026Updated last month
- Multiome GRN inference.☆141Apr 10, 2026Updated 4 months ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 6 months ago
- Assessing the purity of single cell population☆154Jun 3, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R client for the OmniPath web service☆171Aug 3, 2026Updated last week
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Gene set scoring for single-cell data☆203Apr 29, 2026Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data