saezlab / CollecTRI
Gene regulatory network containing signed transcription factor-target gene interactions
☆68Updated 8 months ago
Alternatives and similar repositories for CollecTRI:
Users that are interested in CollecTRI are comparing it to the libraries listed below
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 4 months ago
- ☆39Updated 3 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆39Updated last week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆26Updated 7 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆33Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 3 months ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- Normalize CITEseq Data☆64Updated 7 months ago
- ☆29Updated 4 months ago
- Unified access to several second-generation deconvolution methods☆64Updated last month
- scWGCNA☆56Updated 2 years ago
- Cell type pipes for R☆51Updated 11 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆66Updated 5 months ago
- R package for analysing single cell data☆50Updated 2 years ago
- R package for semi-supervised single-cell data integration☆78Updated 11 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆44Updated 10 months ago
- ☆16Updated 6 months ago
- Using TCR and expression for sequence embedding☆49Updated 2 months ago
- ☆47Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆43Updated 2 months ago
- ☆29Updated last year
- Pan-Cancer Single Cell Classifier☆62Updated 7 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆60Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 9 months ago