saezlab / CollecTRI
Gene regulatory network containing signed transcription factor-target gene interactions
☆64Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for CollecTRI
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- ☆39Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆36Updated 2 weeks ago
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 9 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆24Updated 5 months ago
- Normalize CITEseq Data☆63Updated 5 months ago
- ☆29Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- scWGCNA☆55Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- Cell type pipes for R☆51Updated 9 months ago
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- Unified access to several second-generation deconvolution methods☆57Updated 2 weeks ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Clone identification from single-cell data☆59Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- Pan-Cancer Single Cell Classifier☆61Updated 5 months ago
- ☆27Updated 3 months ago
- R package for analysing single cell data☆48Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- ☆46Updated last year