Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments
☆14Dec 23, 2025Updated 2 months ago
Alternatives and similar repositories for tidesurf
Users that are interested in tidesurf are comparing it to the libraries listed below
Sorting:
- ☆17Feb 16, 2024Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13May 2, 2019Updated 6 years ago
- ☆14Jun 10, 2025Updated 8 months ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆19Feb 9, 2022Updated 4 years ago
- ☆47May 4, 2024Updated last year
- ☆19May 5, 2024Updated last year
- ☆17Jul 13, 2024Updated last year
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- ☆25Oct 25, 2023Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23May 20, 2023Updated 2 years ago
- Analysis and visualization of RNA-Seq results☆30Dec 31, 2025Updated 2 months ago
- ☆34Nov 14, 2025Updated 3 months ago
- R package IReNA☆29Nov 13, 2024Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 10 months ago
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- ☆222May 6, 2024Updated last year
- scDIOR: Single cell data IO softwaRe☆153Feb 15, 2022Updated 4 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- Website and slides for intro to bioinformatics class at Fred Hutch☆13Jun 4, 2018Updated 7 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- Python-based web scraper for extracting gene summaries from GeneCards.☆11Oct 3, 2024Updated last year
- ☆206Dec 6, 2025Updated 3 months ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- ☆14Oct 11, 2019Updated 6 years ago
- ☆11Jul 8, 2024Updated last year
- ☆10Dec 15, 2024Updated last year
- I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.co…☆12Aug 28, 2021Updated 4 years ago
- ☆18Jan 20, 2026Updated last month
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 3 months ago
- ☆12Apr 4, 2023Updated 2 years ago
- Inferring multi-modality dynamics for single cell genomics data☆13Dec 18, 2025Updated 2 months ago
- Exploring Isoform-specific interactions☆12Sep 16, 2025Updated 5 months ago
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆10Nov 12, 2023Updated 2 years ago
- interactive visualization of single-cell transcriptomes☆11Dec 23, 2023Updated 2 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- RNA-binding protein motif analysis☆10Sep 29, 2025Updated 5 months ago