Alternatives and similar repositories for tidesurf

Users that are interested in tidesurf are comparing it to the libraries listed below

• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated 8 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated 2 weeks ago
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• aertslab / ScoMAP
  ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.
  ☆27Updated 3 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• cziegenhain / UMIcountR
  ☆16Updated 3 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated 2 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated last year
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆20Updated 4 years ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆52Updated 4 years ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆56Updated 2 years ago
• gxiaolab / scAllele
  ☆35Updated last year
• neurogenomics / reanalysis_Mathys_2019
  A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…
  ☆14Updated last year
• PoolLab / generecovery
  ☆29Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• UPSUTER / GEMLI
  ☆32Updated 5 months ago
• salzman-lab / SICILIAN
  ☆22Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 3 months ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated this week
• saezlab / footprints
  Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
  ☆20Updated 7 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆19Updated this week
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆23Updated last month
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆22Updated 8 months ago
• yezhengSTAT / ADTnorm
  ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…
  ☆22Updated last week