saeyslab / nichenetrLinks
NicheNet: predict active ligand-target links between interacting cells
☆559Updated last month
Alternatives and similar repositories for nichenetr
Users that are interested in nichenetr are comparing it to the libraries listed below
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆485Updated 5 months ago
- A toolkit for single-cell immune profiling☆345Updated last week
- ☆356Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆435Updated last year
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆430Updated 6 months ago
- R package for integrating and analyzing multiple single-cell datasets☆418Updated last month
- ☆401Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆445Updated last month
- Community-provided extensions to Seurat☆342Updated 9 months ago
- Inferring CNV from Single-Cell RNA-Seq☆632Updated 6 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆531Updated last month
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆499Updated 3 weeks ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆419Updated 2 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆301Updated 5 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆464Updated last year
- RNA Velocity generalized through dynamical modeling☆458Updated 6 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆385Updated this week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆595Updated 9 months ago
- High dimensional weighted gene co-expression network analysis☆430Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆544Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆353Updated 3 weeks ago
- ☆272Updated 9 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆426Updated 2 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆329Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆292Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆391Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆361Updated 5 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆291Updated 2 years ago
- A tool for semi-automatic cell type classification☆397Updated 3 weeks ago