saeyslab / nichenetrLinks
NicheNet: predict active ligand-target links between interacting cells
☆609Updated 2 months ago
Alternatives and similar repositories for nichenetr
Users that are interested in nichenetr are comparing it to the libraries listed below
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆517Updated 10 months ago
- ☆435Updated 3 weeks ago
- ☆358Updated 4 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆444Updated 11 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆528Updated 3 months ago
- Inferring CNV from Single-Cell RNA-Seq☆650Updated 2 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆460Updated 7 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆519Updated 3 weeks ago
- R toolkit for the analysis of single-cell chromatin data☆402Updated last week
- A package to help convert different single-cell data formats to each other☆452Updated last year
- A toolkit for single-cell immune profiling☆362Updated this week
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆478Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆618Updated 3 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆572Updated 7 months ago
- Community-provided extensions to Seurat☆354Updated 3 weeks ago
- RNA Velocity generalized through dynamical modeling☆484Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆425Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆619Updated 2 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆318Updated 5 years ago
- High dimensional weighted gene co-expression network analysis☆462Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆374Updated 6 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆402Updated 5 months ago
- ☆286Updated last year
- ☆645Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆413Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆433Updated last week
- A tool for semi-automatic cell type classification☆450Updated 3 weeks ago
- Table of software for the analysis of single-cell RNA-seq data.☆337Updated this week
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆409Updated 4 months ago