🦠🧬 Unraveling Viral Genomes from Metagenomes
☆11Jul 30, 2026Updated 3 months ago
Alternatives and similar repositories for reneo
Users that are interested in reneo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…☆11Nov 6, 2025Updated 11 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Taxon Set Enrichment Analysis☆12Oct 26, 2026Updated last week
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- VIGOR4☆24Aug 15, 2025Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated 6 months ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆50Jul 12, 2026Updated 3 months ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Oct 15, 2026Updated 2 weeks ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆41Sep 20, 2026Updated last month
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆18Mar 16, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Discover and annotate the virome☆64Jun 10, 2026Updated 4 months ago
- MGY441 Bioinformatics: Virus Discovery Project☆26Dec 22, 2025Updated 10 months ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 4 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 9 months ago
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆20Apr 15, 2026Updated 6 months ago
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated 2 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- Computational workflow for virus genome reconstruction☆10Sep 17, 2026Updated last month
- ☆15May 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Jun 1, 2026Updated 5 months ago
- manage ordinations and render biplots in a tidyverse workflow☆27Oct 25, 2026Updated last week
- Quickly get coverage statistics given reads and an assembly☆18May 13, 2024Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Vanjari is a tool for the classification of viruses using neural networks☆14Nov 21, 2025Updated 11 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆39Oct 14, 2026Updated 2 weeks ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆35Jul 29, 2024Updated 2 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- A tool to measure bacteriophages plaque sizes☆17May 12, 2023Updated 3 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆51Oct 17, 2023Updated 3 years ago
- Representing biological sequences as Markov chains☆10Dec 9, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago