🦠🧬 Unraveling Viral Genomes from Metagenomes
☆11Oct 3, 2025Updated 9 months ago
Alternatives and similar repositories for reneo
Users that are interested in reneo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- VIGOR4☆22Aug 15, 2025Updated 11 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 3 months ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated 3 months ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆20Jun 19, 2026Updated last month
- ☆15May 22, 2025Updated last year
- MGY441 Bioinformatics: Virus Discovery Project☆24Dec 22, 2025Updated 7 months ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated last month
- ☆22Jun 1, 2026Updated last month
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆18Mar 16, 2026Updated 4 months ago
- Discover and annotate the virome☆64Jun 10, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 7 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆37Updated this week
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆19Apr 15, 2026Updated 3 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated 10 months ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 4 months ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆51Oct 17, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- A tool to measure bacteriophages plaque sizes☆17May 12, 2023Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 10 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆19Jul 17, 2026Updated last week
- ☆10Jun 9, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- manage ordinations and render biplots in a tidyverse workflow☆27May 2, 2026Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72Jul 16, 2026Updated last week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Jul 15, 2026Updated last week
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆47Jul 12, 2026Updated last week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated last month