metagentools / metagenomic_binning_review
Code used to analyse and plot metadata of metagenomic binning tools
☆11Updated 4 months ago
Alternatives and similar repositories for metagenomic_binning_review:
Users that are interested in metagenomic_binning_review are comparing it to the libraries listed below
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated 3 weeks ago
- ☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- MAGScoT - a MAG scoring and refinement tool☆31Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- MAG Circularization Method☆33Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆48Updated 6 months ago
- Bacterial GWAS analysis☆34Updated last month
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆21Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- Calculate assocations between genes and traits☆20Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Prophage Activity Estimator☆26Updated 7 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- KEGG Module Evaluation Tool☆27Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆41Updated last month
- ☆16Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆19Updated 3 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- viralFlye pipeline☆19Updated 5 months ago
- ☆25Updated 11 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆32Updated last year