metagentools / metagenomic_binning_reviewLinks
Code used to analyse and plot metadata of metagenomic binning tools
☆14Updated 10 months ago
Alternatives and similar repositories for metagenomic_binning_review
Users that are interested in metagenomic_binning_review are comparing it to the libraries listed below
Sorting:
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Resolving Species Level Classification Using Emu☆13Updated last year
- ☆23Updated 4 months ago
- Bacterial GWAS analysis☆40Updated last month
- ☆21Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- ☆26Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- Prophage Activity Estimator☆26Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Repository for general metagenomics Nextflow pipeline☆16Updated this week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Calculate assocations between genes and traits☆23Updated 3 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆22Updated last week
- viralFlye pipeline☆18Updated 10 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆19Updated 3 weeks ago