MDU-PHL / meningotype
In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis
☆12Updated last year
Alternatives and similar repositories for meningotype:
Users that are interested in meningotype are comparing it to the libraries listed below
- CFSAN Shigella Typing Pipeline☆14Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Intra-species bacterial contamination detection☆24Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 3 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 6 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 5 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆11Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- Resolving Species Level Classification Using Emu☆12Updated 7 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆24Updated 9 months ago
- Systematic resistome analysis☆10Updated 4 years ago
- Visualize microbial evolution at the SNP level!☆14Updated 2 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆41Updated last month
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆11Updated 4 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- UPHL's Reference Free Pipeline☆25Updated this week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 4 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆15Updated 3 months ago
- Genome size estimation from long read overlaps☆47Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆10Updated this week
- Finding regions of similarity between plasmids☆16Updated 2 years ago