MDU-PHL / meningotypeLinks
In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis
☆14Updated 7 months ago
Alternatives and similar repositories for meningotype
Users that are interested in meningotype are comparing it to the libraries listed below
Sorting:
- CFSAN Shigella Typing Pipeline☆14Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 6 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆27Updated last month
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Recombination-free trees☆59Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Fast viral consensus genome reconstruction☆23Updated last month
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Pneumococcal Capsular Typing tool for NGS data☆17Updated 4 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆36Updated last week
- Resolving Species Level Classification Using Emu☆14Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated 2 months ago
- Bacterial surveillance pipeline.☆25Updated 2 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 3 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆16Updated 10 months ago