MDU-PHL / meningotype
In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis
☆11Updated last year
Related projects: ⓘ
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Intra-species bacterial contamination detection☆22Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆18Updated 2 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆18Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆11Updated last year
- Resolving Species Level Classification Using Emu☆12Updated 3 months ago
- Bioinformatics tool for Locus Visualisation☆15Updated this week
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 3 months ago
- ☆26Updated this week
- Get microbial sequence data easier and faster☆28Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- UPHL's Reference Free Pipeline☆23Updated 2 weeks ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆22Updated 4 months ago
- ☆13Updated this week
- Fast viral consensus genome reconstruction☆22Updated 2 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- SARs-CoV-2 Primer schemes☆14Updated last year
- Bacterial genomes finishing tool for structural insights on draft genomes☆22Updated 11 months ago
- TAXnomic Profile Aggregation and STAndardisation☆33Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆35Updated 2 months ago
- Targeted Detection and Reconstruction of Plasmids☆19Updated 4 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆30Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆38Updated last week
- Plasmid exploration of bacterial genomes☆17Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆24Updated 5 months ago
- Colinear block visualisation tool☆30Updated 8 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 4 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago