medvir / VirMet

Related projects: ⓘ

• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆18Updated 4 years ago
• chrisquince / StrainMetaSim
  Strain resolved metagenome simulator
  ☆12Updated 6 years ago
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆14Updated 3 months ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆30Updated 5 months ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 3 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆21Updated 4 years ago
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆12Updated 8 years ago
• hcdenbakker / colorid
  Experiments with using BIGSI data structure for metagenomic and QC applications
  ☆18Updated last month
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 8 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 5 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆31Updated last year
• phiweger / darkq
  A message queue for genomic surveillance
  ☆20Updated 2 years ago
• CFSAN-Biostatistics / snp-mutator
  Generate mutated sequence files from a reference genome.
  ☆12Updated last year
• FredHutch / gig-map
  Build a map of genes present across a set of microbial genomes
  ☆12Updated 2 months ago
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated 6 months ago
• marbl / MUMmer3
  MUMmer3
  ☆15Updated 2 years ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆16Updated last month
• ythuang0522 / StriDe
  StriDe Assembler
  ☆25Updated 6 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 5 years ago
• rvaser / bioparser
  C++ library for parsing several formats in bioinformatics
  ☆9Updated last year
• snz20 / carnelian
  ☆11Updated 3 years ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 3 years ago
• yechengxi / SparseAssembler
  A sparse k-mer graph based, memory-efficient genome assembler.
  ☆10Updated 6 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆18Updated 4 years ago
• GATB / short_read_connector
  Short Read Connector (SRC)
  ☆10Updated last year