medvir / VirMetLinks
Set of tools for viral metagenomics.
☆14Updated 2 weeks ago
Alternatives and similar repositories for VirMet
Users that are interested in VirMet are comparing it to the libraries listed below
Sorting:
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- reference free variant assembly☆33Updated last year
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated 9 months ago
- MUMmer3☆17Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- Build sourmash databases for genbank.☆12Updated 2 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Viral genome assemble and characterisation☆10Updated last year
- Searching for Horizontal Gene Transfer☆11Updated 5 years ago
- Build a map of genes present across a set of microbial genomes☆14Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- C++ library for parsing several formats in bioinformatics☆9Updated 2 years ago
- Genome assembly/prediction/annotation pipeline for the Linux command line☆8Updated 7 months ago
- ☆11Updated 4 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- map Illumina metagenomes to genomes!☆38Updated 2 weeks ago
- ☆9Updated 7 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- ☆20Updated 9 months ago
- Northern Arizona SNP Pipeline☆19Updated 7 months ago
- MetaCarvel: A scaffolder for metagenomes☆14Updated 8 months ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆14Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆56Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆40Updated 7 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago