medvir / VirMetLinks
Set of tools for viral metagenomics.
☆14Updated last month
Alternatives and similar repositories for VirMet
Users that are interested in VirMet are comparing it to the libraries listed below
Sorting:
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Northern Arizona SNP Pipeline☆19Updated 9 months ago
- Whole genome focused array SNP typer☆13Updated last month
- reference free variant assembly☆33Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 7 months ago
- Generate mutated sequence files from a reference genome.☆12Updated 2 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated last week
- Strain resolved metagenome simulator☆13Updated 7 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- An RNA virus strain-level identification tool for short reads.☆21Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Read contamination removal☆25Updated last year
- A message queue for genomic surveillance☆20Updated 3 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Main development repository for SpreadGL☆19Updated 10 months ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18Updated 7 years ago
- blast, shmlast☆22Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- LoFreq Version 3☆27Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆43Updated 9 years ago