Set of tools for viral metagenomics.
☆17Jun 1, 2026Updated 2 months ago
Alternatives and similar repositories for VirMet
Users that are interested in VirMet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 8 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆40Aug 4, 2026Updated last week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 4 months ago
- ☆12Dec 22, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 4 months ago
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 2 weeks ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated last year
- A pipeline for viral identification from metagenomic samples☆29Oct 15, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆18Mar 16, 2026Updated 4 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆45Jun 10, 2026Updated 2 months ago
- PhyDyn: Epidemiological modelling in BEAST☆21Dec 22, 2022Updated 3 years ago
- A pipeline to investigate horizontal gene transfer from NGS data☆27Jul 27, 2026Updated 2 weeks ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 8 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated last month
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- Nextflow workflow template repository☆20Jul 29, 2026Updated 2 weeks ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 4 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated 2 years ago
- ☆15May 22, 2025Updated last year
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 5 months ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 8 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆26Jul 13, 2018Updated 8 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Code and data associated with Duffy, James, and Longworth Applied and Environmental Microbiology paper describing the ecology, virulence,…☆11May 8, 2018Updated 8 years ago