medvir / VirMet
Set of tools for viral metagenomics.
☆14Updated this week
Alternatives and similar repositories for VirMet:
Users that are interested in VirMet are comparing it to the libraries listed below
- reference free variant assembly☆33Updated last year
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- Histosketching Using Little Kmers☆55Updated last year
- Build a map of genes present across a set of microbial genomes☆13Updated this week
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Build sourmash databases for genbank.☆12Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆36Updated 4 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆32Updated 3 years ago
- map Illumina metagenomes to genomes!☆38Updated 2 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆18Updated 6 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆14Updated 11 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆56Updated last year
- MUMmer3☆16Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- multiPhATE with comparative genomics☆18Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 8 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- C++ library for parsing several formats in bioinformatics☆9Updated last year
- ☆20Updated 5 months ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- MetaCarvel: A scaffolder for metagenomes☆13Updated 4 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- ☆28Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago