shenwei356 / ncbi_acc2gtdb_accLinks
Mapping NCBI Genbank accession to GTDB accession
☆14Updated 4 years ago
Alternatives and similar repositories for ncbi_acc2gtdb_acc
Users that are interested in ncbi_acc2gtdb_acc are comparing it to the libraries listed below
Sorting:
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Simulate mutations in genomes☆15Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last month
- De novo VIral Genome Annotator☆21Updated 8 months ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- a Rust crate for working with a local copy of the NCBI Taxonomy database☆10Updated 2 years ago
- ☆16Updated 7 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- blast, shmlast☆22Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Pipeline for analyzing (rare) mutations in metagenome-assembled genomes☆11Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ☆19Updated 8 years ago
- ☆13Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- ☆11Updated last year
- Shared k-mer content between two genomes☆17Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- ☆14Updated 9 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 9 months ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year