Mapping NCBI Genbank accession to GTDB accession
☆14Feb 13, 2021Updated 5 years ago
Alternatives and similar repositories for ncbi_acc2gtdb_acc
Users that are interested in ncbi_acc2gtdb_acc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 2 months ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated 2 years ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Python bindings for the TaxonKit library☆43Jul 1, 2026Updated 3 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Jan 29, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17May 22, 2023Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated last month
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jul 11, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PLSDB pipeline to collect bacterial plasmids from NCBI☆41Oct 23, 2024Updated last year
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- Just another minhash implementation.☆12May 28, 2026Updated 2 months ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- ☆16Jun 18, 2020Updated 6 years ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated 2 months ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated 4 months ago
- ☆43Feb 14, 2021Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Updated this week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 2 weeks ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago