shenwei356 / ncbi_acc2gtdb_accLinks
Mapping NCBI Genbank accession to GTDB accession
☆14Updated 4 years ago
Alternatives and similar repositories for ncbi_acc2gtdb_acc
Users that are interested in ncbi_acc2gtdb_acc are comparing it to the libraries listed below
Sorting:
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆11Updated last week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- ☆16Updated 7 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- De novo VIral Genome Annotator☆23Updated 10 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 8 years ago
- Simulate mutations in genomes☆15Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- ☆19Updated 8 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- blast, shmlast☆22Updated 4 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated 7 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 5 months ago
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- ☆13Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago