Mapping NCBI Genbank accession to GTDB accession
☆14Feb 13, 2021Updated 5 years ago
Alternatives and similar repositories for ncbi_acc2gtdb_acc
Users that are interested in ncbi_acc2gtdb_acc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 5 months ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 3 months ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequenc…☆24Aug 13, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated 2 weeks ago
- Python bindings for the TaxonKit library☆43Oct 1, 2026Updated 2 weeks ago
- ☆17May 22, 2023Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- CAMITAX: Taxon labels for microbial genomes☆32Dec 14, 2023Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆69Oct 12, 2026Updated last week
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆66Oct 7, 2026Updated 2 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆61Mar 26, 2026Updated 6 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Sep 27, 2026Updated 3 weeks ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 11 months ago
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆40Oct 23, 2024Updated last year
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 8 months ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Just another minhash implementation.☆13Sep 14, 2026Updated last month
- ☆16Jun 18, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆109Oct 12, 2026Updated last week
- ☆47Jun 27, 2023Updated 3 years ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 8 months ago
- ☆14Oct 14, 2020Updated 6 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆96May 11, 2026Updated 5 months ago
- Protal is tool for taxonomic profiling from whole-genome shotgun sequencing data. With GTDB marker genes as reference, protal is able to …☆16Aug 10, 2026Updated 2 months ago