shenwei356 / ncbi_acc2gtdb_acc
Mapping NCBI Genbank accession to GTDB accession
☆14Updated 4 years ago
Alternatives and similar repositories for ncbi_acc2gtdb_acc:
Users that are interested in ncbi_acc2gtdb_acc are comparing it to the libraries listed below
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ☆16Updated 6 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- De novo VIral Genome Annotator☆21Updated 6 months ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- ☆11Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- blast, shmlast☆22Updated 4 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated 10 months ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆9Updated 3 weeks ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- PanGenomePipeline☆16Updated 11 months ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 7 months ago
- Real-time species-typing visualisation for nanopore data.☆13Updated last year