shenwei356 / ncbi_acc2gtdb_accLinks
Mapping NCBI Genbank accession to GTDB accession
☆14Updated 4 years ago
Alternatives and similar repositories for ncbi_acc2gtdb_acc
Users that are interested in ncbi_acc2gtdb_acc are comparing it to the libraries listed below
Sorting:
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Highly sensitive pathogen detection☆12Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Simulate mutations in genomes☆15Updated 5 years ago
- De novo VIral Genome Annotator☆21Updated 9 months ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated this week
- ☆16Updated 7 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- ☆11Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- A taxonomic classifier for shotgun metagenomics reads☆12Updated 2 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 10 months ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- blast, shmlast☆22Updated 4 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago