niaid / virome-pipelineView external linksLinks
This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.
β13Feb 6, 2026Updated last week
Alternatives and similar repositories for virome-pipeline
Users that are interested in virome-pipeline are comparing it to the libraries listed below
Sorting:
- π¦ 𧬠Unraveling Viral Genomes from Metagenomesβ10Oct 3, 2025Updated 4 months ago
- Code for de novo discovery of viral families in virome dataβ16Jun 20, 2024Updated last year
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.β17Feb 10, 2026Updated last week
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the riskβ¦β19Apr 8, 2022Updated 3 years ago
- Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysisβ18May 3, 2023Updated 2 years ago
- Analysis platform for large-scale dose-dependent dataβ26Nov 25, 2025Updated 2 months ago
- Quantitative features for mass spectrometry dataβ29Jan 9, 2026Updated last month
- bioinformatics for peterβ11Apr 8, 2025Updated 10 months ago
- Course repo for material related to CYPLAN 255 at UC Berkeley, Spring 2024β11May 7, 2024Updated last year
- Anki decks for Technion coursesβ13Apr 26, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolateβ38Mar 25, 2025Updated 10 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.β78Apr 16, 2025Updated 10 months ago
- A python library for predicting phage lifestyle based on genome sequenceβ40Aug 9, 2023Updated 2 years ago
- An open database of vertebrate-virus interactionsβ40Dec 16, 2025Updated 2 months ago
- ImageJ macro for microglia morphology analysisβ17Jan 13, 2026Updated last month
- Quickstart tutorial Prerequisites Before reading this tutorial you should know a bit of Python. If you would like to refresh your memory,β¦β13Dec 14, 2021Updated 4 years ago
- Course Projects for CS 61B, the data structures class at UC Berkeley, Spring 2014β10Oct 7, 2014Updated 11 years ago
- A Python package for amino acid sequence analysis. Proforma 2.1 complicant.β14Feb 6, 2026Updated last week
- MicrobiomeReviewβ11Jun 6, 2023Updated 2 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipelineβ11Mar 18, 2021Updated 4 years ago
- Homework for STAT 205A - Berkeleyβ13Dec 9, 2014Updated 11 years ago
- β38Dec 6, 2023Updated 2 years ago
- Fully automatic skin lesion segmentation using the Berkeley wavelet transform and UNet algorithm.β12Jun 1, 2021Updated 4 years ago
- β10Dec 17, 2025Updated 2 months ago
- Clonal structure identification through penalizing pairwise differencesβ11Nov 25, 2025Updated 2 months ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.β11Feb 4, 2026Updated 2 weeks ago
- File Permissions Plugin is a repository that provides a simple plugin to change file permissions directly from IntelliJ.β10Apr 27, 2025Updated 9 months ago
- Deep Neural Network course @ UC Berkeley, taken Spring 2019β10Dec 7, 2022Updated 3 years ago
- This repository contains original codes for major analyses in the manuscript 'The multi-kingdom airway microbiome mediates the interactioβ¦β13Apr 27, 2024Updated last year
- The OpenCV matchTemplate primitive for gpu has been adapted in order to enable calculations on 32-bit floating-point raw data.β10Feb 11, 2018Updated 8 years ago
- β14Feb 21, 2024Updated last year
- Tools for treatment high res mass spectrum of natural organic matter samplesβ11Aug 4, 2023Updated 2 years ago
- CSC 541 Assignment 4 B-Trees Introduction The goals of this assignment are two-fold: To introduce you to searching data on disk using Bβ¦β11May 10, 2015Updated 10 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.β11Aug 20, 2021Updated 4 years ago
- This repository contains notes and documents related to my atmospheric modeling postdoctoral work at UC Berkeleyβ10Oct 31, 2015Updated 10 years ago
- Implementation of multiplex Leiden for analysis of spatial omics dataβ17Feb 2, 2026Updated 2 weeks ago
- Deep Learning Scaling tutorial material for the Deep Learning for Science School at Berkeley Labβ10Jul 19, 2019Updated 6 years ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomicsβ11Sep 17, 2021Updated 4 years ago
- self study java, through cs61b (http://www.cs.berkeley.edu/~jrs/61b/)β10Jul 9, 2013Updated 12 years ago