Alternatives and similar repositories for virome-pipeline

Users that are interested in virome-pipeline are comparing it to the libraries listed below

• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 4 years ago
• denisbeslic / BacterialGenomeAnalysis
  Automated pipeline for whole bacterial genome analysis based on snakemake
  ☆12Updated 3 years ago
• vinuesa / TIB-filoinfo
  Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
  ☆26Updated 2 months ago
• genomicsITER / one-liners
  Frequently used commands in Bioinformatics
  ☆21Updated 2 weeks ago
• tobiasrausch / nRex
  nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
  ☆12Updated 3 months ago
• LRB-IIMCB / ninetails
  An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
  ☆13Updated last month
• bioinformatics-core-shared-training / Bulk_RNAseq_Course_Base
  ☆19Updated last month
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆23Updated last year
• YoukaiFromAccounting / skandiver
  skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…
  ☆13Updated last month
• rcolpo / pgp_reconstruction
  Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
  ☆12Updated 2 years ago
• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆13Updated last year
• alejandrogzi / bed2gtf
  high-performance BED-to-GTF converter written in Rust
  ☆17Updated last year
• Vini2 / reneo
  🦠🧬 Unraveling Viral Genomes from Metagenomes
  ☆10Updated 2 months ago
• daisybio / TF-Prioritizer
  Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
  ☆14Updated last year
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆18Updated last year
• davidlougheed / strkit
  A short tandem repeat (STR) genotyping and analysis toolkit for long reads
  ☆16Updated 2 weeks ago
• ualr-Rgroup / metabolomics-in-r
  Supporting material for "Processing and visualization of metabolomics data using R"
  ☆20Updated 8 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆36Updated 5 months ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 5 months ago
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆16Updated 2 weeks ago
• mwang87 / GNPS_MASST
  ☆14Updated last month
• himelmallick / IntegratedLearner
  Integrated Machine Learning for Multi-omics Classification and Prediction
  ☆27Updated last month
• phac-nml / mikrokondo
  A simple pipeline for bacterial assembly and quality control
  ☆17Updated 2 weeks ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆42Updated last year
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆38Updated last year
• joonan-lab / cwas
  Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)
  ☆10Updated 2 weeks ago
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 3 months ago
• EvaYiwenWang / PLSDAbatch_workflow
  ☆18Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated last week
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 11 months ago