niaid / virome-pipelineLinks
This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.
☆12Updated 7 months ago
Alternatives and similar repositories for virome-pipeline
Users that are interested in virome-pipeline are comparing it to the libraries listed below
Sorting:
- Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México☆23Updated last week
- Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads☆9Updated last year
- Automated pipeline for whole bacterial genome analysis based on snakemake☆11Updated 3 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆9Updated 2 months ago
- ☆17Updated last week
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆13Updated 3 years ago
- Best-matched internal standard normalization for metabolomics☆9Updated 7 years ago
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Updated 2 months ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆12Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Frequently used commands in Bioinformatics☆21Updated 6 months ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆9Updated 9 months ago
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Updated last year
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 8 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Updated 9 months ago
- high-performance BED-to-GTF converter written in Rust☆15Updated 7 months ago
- Integrated Machine Learning for Multi-omics Classification and Prediction☆21Updated 2 weeks ago
- ☆13Updated 2 months ago
- Supporting material for "Processing and visualization of metabolomics data using R"☆20Updated 8 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Updated last year
- A curated collection of free resources to help the aspiring computational biologist learn about the R programming language.☆23Updated 7 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)☆13Updated 4 months ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Updated 7 months ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆13Updated 3 weeks ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- Single sample pathway analysis tools for omics data☆12Updated 8 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year