tillrobin / iMGMCLinks
Repository of the integrated mouse gut metagenomic catalog
☆19Updated 3 years ago
Alternatives and similar repositories for iMGMC
Users that are interested in iMGMC are comparing it to the libraries listed below
Sorting:
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆19Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆36Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆41Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Updated 6 years ago
- Working with the outputs of sourmash in R☆27Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last week
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated last year
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- De novo VIral Genome Annotator☆23Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆18Updated 7 months ago