tillrobin / iMGMCLinks
Repository of the integrated mouse gut metagenomic catalog
☆20Updated 3 years ago
Alternatives and similar repositories for iMGMC
Users that are interested in iMGMC are comparing it to the libraries listed below
Sorting:
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- De novo VIral Genome Annotator☆21Updated 8 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- ☆22Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Microbiome profiling☆16Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A healthy human gut genome collection☆22Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- ☆13Updated 5 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- ☆23Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- Tools for analyzing trees☆14Updated last month