tillrobin / iMGMCLinks
Repository of the integrated mouse gut metagenomic catalog
☆20Updated 3 years ago
Alternatives and similar repositories for iMGMC
Users that are interested in iMGMC are comparing it to the libraries listed below
Sorting:
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 2 weeks ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last week
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 5 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 3 months ago
- ☆42Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 8 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago