Visualize microbial evolution at the SNP level!
☆15Aug 12, 2025Updated 7 months ago
Alternatives and similar repositories for virHEAT
Users that are interested in virHEAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 2 months ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 2 months ago
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 3 weeks ago
- ☆30Updated this week
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆18Mar 18, 2026Updated last week
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆48Feb 20, 2026Updated last month
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Mar 20, 2026Updated last week
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- ☆16May 22, 2023Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆127Jan 16, 2026Updated 2 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- ☆30Mar 6, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated last week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Mar 23, 2026Updated last week
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 8 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Nov 17, 2025Updated 4 months ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 8 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated 11 months ago
- ☆10Jun 9, 2025Updated 9 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated last month
- A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.☆27Mar 22, 2026Updated last week
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ☆19Nov 11, 2024Updated last year
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Dec 12, 2025Updated 3 months ago