ncbi / sars2variantcallingLinks
The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized format
☆14Updated 2 years ago
Alternatives and similar repositories for sars2variantcalling
Users that are interested in sars2variantcalling are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆39Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- ☆10Updated 13 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆28Updated 7 months ago
- WDL workflows for variant calling and assembly using ONT☆37Updated last month
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆19Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated 3 weeks ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- ☆13Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Benchmark datasets for WGS analysis☆39Updated 6 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago