ncbi / sars2variantcallingLinks
The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized format
☆15Updated 2 years ago
Alternatives and similar repositories for sars2variantcalling
Users that are interested in sars2variantcalling are comparing it to the libraries listed below
Sorting:
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Dynamic, adaptive sampling during nanopore sequencing☆34Updated last month
- ☆36Updated 2 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆38Updated 3 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 9 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- Long-read splice alignment with high accuracy☆63Updated 9 months ago
- Hitting associations with k-mers☆45Updated 3 years ago
- Master of Pores 2☆23Updated 6 months ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆15Updated 7 months ago
- Get, parse, and extract information from the SRA metadata files☆42Updated 2 years ago
- De novo construction of isoforms from long-read data☆31Updated 2 weeks ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Updated 3 years ago
- ☆37Updated 2 months ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆26Updated last month
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 7 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆29Updated last year
- ☆28Updated last month
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆26Updated 4 months ago