VIGOR4
☆22Aug 15, 2025Updated 11 months ago
Alternatives and similar repositories for VIGOR4
Users that are interested in VIGOR4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- ☆22Jun 1, 2026Updated last month
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆37Apr 24, 2025Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Jul 15, 2026Updated last week
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Jul 8, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated last month
- UPHL's Reference Free Pipeline☆29Updated this week
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Dec 9, 2024Updated last year
- ☆14Jun 30, 2021Updated 5 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆19Apr 15, 2026Updated 3 months ago
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated 2 months ago
- ☆68Jul 8, 2016Updated 10 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 7 months ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆16Feb 19, 2026Updated 5 months ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 7 years ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated last week
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- Reference-based consensus creation☆61Updated this week
- Influenza data pipeline to automate genotyping assignment☆44Mar 19, 2026Updated 4 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 2 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Updated this week
- Stitch together Nanopore tiled amplicon data without polishing a reference☆18Jan 29, 2024Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated last month
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆118Jun 18, 2026Updated last month
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 5 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year