jsevo / taxumap
☆16Updated last year
Alternatives and similar repositories for taxumap
Users that are interested in taxumap are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 8 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Surveillance of pathogens using population genomics and sequencing☆23Updated this week
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 10 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 5 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Factorize metagenotypes to infer strains and their abundances☆12Updated 7 months ago
- finding conserved regions in highly diverse genomes☆15Updated 9 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 11 months ago
- ☆27Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- ☆21Updated 3 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 3 months ago
- Download assembly files from NCBI☆12Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 3 years ago
- transposable element typing pipeline☆18Updated last year
- Northern Arizona SNP Pipeline☆19Updated 6 months ago