jsevo / taxumap
☆16Updated last year
Alternatives and similar repositories for taxumap:
Users that are interested in taxumap are comparing it to the libraries listed below
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- De novo VIral Genome Annotator☆21Updated 6 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 4 months ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 7 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 11 months ago
- Raspir, the rare species identifier☆11Updated last year
- Download assembly files from NCBI☆12Updated last year
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Updated last year
- C++ tools for NCBI taxonomy tasks☆11Updated 3 years ago
- ☆22Updated 2 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 10 months ago
- 2025 RAD microbes boot camp☆10Updated 3 weeks ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 8 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated last year
- finding conserved regions in highly diverse genomes☆16Updated 7 months ago
- Dadaist2 🟨 Highway to R☆13Updated 3 weeks ago
- Surveillance of pathogens using population genomics and sequencing☆20Updated 2 weeks ago
- ☆17Updated 2 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- ☆19Updated last year