jsevo / taxumap
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for taxumap
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆21Updated 8 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- De novo VIral Genome Annotator☆21Updated 2 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 2 years ago
- Raspir, the rare species identifier☆11Updated last year
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 2 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 6 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- transposable element typing pipeline☆16Updated 8 months ago
- finding conserved regions in highly diverse genomes☆15Updated 3 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆14Updated 2 months ago
- Dadaist2 🟨 Highway to R☆13Updated 8 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆20Updated last year
- Highly sensitive pathogen detection☆11Updated 4 years ago
- Download assembly files from NCBI☆11Updated last year
- The Mouse Gastrointestinal Bacteria Catalogue☆14Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆24Updated 3 months ago
- Read contamination removal☆24Updated 9 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆20Updated last year
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 5 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago