🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
☆38May 21, 2024Updated 2 years ago
Alternatives and similar repositories for msabrowser
Users that are interested in msabrowser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Jul 8, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Apr 30, 2026Updated 2 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Apr 10, 2026Updated 2 months ago
- Variant call verification☆18May 12, 2025Updated last year
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated 2 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85May 31, 2022Updated 4 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 3 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 9 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆65Jan 22, 2026Updated 5 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 3 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 11 months ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 5 months ago
- A quality control tool for FASTQ files written in rust☆55Jun 23, 2026Updated last week
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Construct a Physical Map from Linked Reads☆19Apr 1, 2026Updated 3 months ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- zDB: comparative bacterial genomics made easy☆41May 6, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- ABIF parser, writer and generator☆11Dec 8, 2023Updated 2 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year