Alternatives and similar repositories for MetaCarvel

Users that are interested in MetaCarvel are comparing it to the libraries listed below

• marbl / MUMmer3
  MUMmer3
  ☆17Updated 3 years ago
• marbl / harvest-tools
  ☆10Updated 11 months ago
• combogenomics / medusa
  A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
  ☆45Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 2 months ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆51Updated 4 years ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 2 months ago
• hzi-bifo / Haploflow
  ☆30Updated 2 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆56Updated 7 months ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆25Updated 4 months ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated last year
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆53Updated 4 years ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆18Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆54Updated last year
• jhuapl-bio / taxtriage
  TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…
  ☆58Updated last month
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆48Updated 2 years ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 6 years ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆65Updated 3 years ago
• FOI-Bioinformatics / nanometa_live
  A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…
  ☆18Updated last year
• SamStudio8 / gretel
  An algorithm for recovering haplotypes from metagenomes
  ☆30Updated 4 years ago
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆16Updated 4 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• rrwick / Verticall
  Recombination-free trees
  ☆60Updated 2 months ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 6 years ago
• lh3 / hifiasm-meta
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆21Updated 4 years ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆42Updated 4 years ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆23Updated 2 years ago
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated last month
• HaploKit / Strainline
  Full-length de novo viral haplotype reconstruction from noisy long reads
  ☆21Updated 2 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago