marbl / MetaCarvelLinks
MetaCarvel: A scaffolder for metagenomes
☆14Updated last year
Alternatives and similar repositories for MetaCarvel
Users that are interested in MetaCarvel are comparing it to the libraries listed below
Sorting:
- MUMmer3☆17Updated 3 years ago
- ☆10Updated 11 months ago
- ☆30Updated 2 years ago
- viralFlye pipeline☆18Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- Colinear block visualisation tool☆31Updated last year
- Fast viral consensus genome reconstruction☆25Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Updated 4 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Pan-Genomic Matching Statistics☆54Updated last year
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 10 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Plasmid analysis using rearrangement distances☆49Updated 3 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- A set of programs for the taxonomic analysis of genetic sequences☆14Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago