MetaCarvel: A scaffolder for metagenomes
☆14Apr 13, 2026Updated last month
Alternatives and similar repositories for MetaCarvel
Users that are interested in MetaCarvel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaCompass: Reference-guided Assembly of Metagenomes☆43May 4, 2026Updated 2 weeks ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Aug 21, 2024Updated last year
- Set of tools for viral metagenomics.☆16Jan 21, 2026Updated 4 months ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆91May 11, 2026Updated last week
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 8 months ago
- ☆18Apr 6, 2022Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Visualization tool for (meta)genome assembly graphs☆47Updated this week
- OPERA-MS - Hybrid Metagenomic Assembler☆102Jul 3, 2024Updated last year
- ☆46Jun 27, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 4 years ago
- Identifying viruses from metagenomic data by deep learning☆155May 5, 2026Updated 2 weeks ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆16Jun 18, 2020Updated 5 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 3 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 2 months ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆15Nov 3, 2017Updated 8 years ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆16Oct 6, 2023Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Aug 30, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated 2 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Sep 21, 2018Updated 7 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 3 months ago