davised / get_assembliesLinks
Download assembly files from NCBI
☆12Updated 2 years ago
Alternatives and similar repositories for get_assemblies
Users that are interested in get_assemblies are comparing it to the libraries listed below
Sorting:
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- De novo VIral Genome Annotator☆23Updated 11 months ago
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 11 months ago
- ☆22Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 weeks ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆23Updated last week
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆13Updated last year
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆23Updated last week