BIONF / PhyloProfileLinks
A phylogenetic profile analysis tool
☆37Updated 3 weeks ago
Alternatives and similar repositories for PhyloProfile
Users that are interested in PhyloProfile are comparing it to the libraries listed below
Sorting:
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ☆22Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Updated 3 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago