m-crown / SPEARLinks
Systematic ProtEin AnnotatoR
☆19Updated 10 months ago
Alternatives and similar repositories for SPEAR
Users that are interested in SPEAR are comparing it to the libraries listed below
Sorting:
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆28Updated this week
- Read contamination removal☆25Updated last year
- Influenza genome analysis Nextflow workflow☆22Updated last month
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated this week
- Find Unique genomic Regions☆30Updated this week
- Main development repository for SpreadGL☆19Updated 11 months ago
- Fast viral consensus genome reconstruction☆23Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- SARs-CoV-2 Primer schemes☆16Updated 3 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 4 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last week
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 3 years ago
- ☆26Updated 2 years ago
- ☆31Updated last year
- Intra-species bacterial contamination detection☆25Updated 6 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago