Systematic ProtEin AnnotatoR
☆19Sep 20, 2025Updated 8 months ago
Alternatives and similar repositories for SPEAR
Users that are interested in SPEAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 6 months ago
- snipit: summarise snps relative to your reference sequence☆173Jan 13, 2026Updated 4 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- ☆75Jan 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 11 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 11 months ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆24Feb 23, 2026Updated 3 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Programmatically interact with the GISAID database.☆82Aug 5, 2025Updated 10 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 2 months ago
- ☆32Sep 21, 2023Updated 2 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 8 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- ☆44Feb 13, 2026Updated 3 months ago
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- ☆17May 22, 2023Updated 3 years ago
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆19Updated this week
- A phylogenetic profile analysis tool☆38Jun 1, 2026Updated last week
- UPHL's Reference Free Pipeline☆28May 22, 2026Updated 2 weeks ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆34Jul 2, 2024Updated last year
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115May 31, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- ☆38Jan 12, 2026Updated 4 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Fast viral consensus genome reconstruction☆27Feb 5, 2026Updated 4 months ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated 2 years ago