Alternatives and similar repositories for fa-rename:

Users that are interested in fa-rename are comparing it to the libraries listed below

• GDKO / AvP
  Automatic evaluation of HGTs
  ☆26Updated last month
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated 8 months ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 5 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆28Updated last year
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated 5 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 4 months ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆12Updated 2 years ago
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆20Updated last month
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• linudz / caastools
  CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
  ☆18Updated last year
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated 10 months ago
• pnatsi / OGFilter
  A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria
  ☆16Updated 4 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆22Updated 4 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 5 months ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆33Updated 6 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆30Updated 5 years ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆14Updated 2 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆12Updated 10 years ago
• at-cg / RAFT
  ☆22Updated 6 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆25Updated 2 weeks ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• bayesiancook / phylobayes
  PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)
  ☆14Updated 3 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆27Updated 2 months ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago