byemaxx / callCodemlLinks
This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)
☆18Updated 3 years ago
Alternatives and similar repositories for callCodeml
Users that are interested in callCodeml are comparing it to the libraries listed below
Sorting:
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 5 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- ☆45Updated 3 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated 2 weeks ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Genome Annotation Pipeline☆39Updated last year
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- MCMCtree tutorials☆24Updated last year
- ☆40Updated 2 years ago
- ☆28Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 8 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆20Updated last year
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆31Updated 10 months ago