☆18Nov 9, 2020Updated 5 years ago
Alternatives and similar repositories for Phylo-HMRF
Users that are interested in Phylo-HMRF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Apr 12, 2019Updated 6 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Mar 14, 2026Updated 2 weeks ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated 8 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆30Jun 30, 2024Updated last year
- Figures for the CHM13 T2T SD paper.☆11Sep 12, 2021Updated 4 years ago
- Segmental duplication detection tool☆16Feb 7, 2023Updated 3 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 9 months ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Genome alignment and synteny plots☆34Jun 5, 2023Updated 2 years ago
- ☆26Jan 26, 2026Updated 2 months ago
- FAN-C: Framework for the ANalysis of C-like data☆122Mar 13, 2024Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Comparison of Hi-C Experiments using Structural Similarity.☆28Jul 18, 2023Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Aug 29, 2022Updated 3 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆128Feb 3, 2026Updated last month
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 8 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 9 months ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 3 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- ☆41Jun 8, 2023Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Micro-C QC and data analysis☆16Aug 1, 2023Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆268Jul 17, 2025Updated 8 months ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago