Genomics 3D Visualizer
☆14Jun 14, 2024Updated 2 years ago
Alternatives and similar repositories for g3d
Users that are interested in g3d are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- Tandem repeat genotyping from long reads☆26Jul 2, 2026Updated 3 weeks ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Jun 17, 2025Updated last year
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆14May 16, 2024Updated 2 years ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 10 months ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- ☆13Sep 11, 2025Updated 10 months ago
- GENome Organisation Visual Analytics☆92Feb 3, 2026Updated 5 months ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 3 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Docker for 4DN Hi-C processing pipeline☆61Nov 26, 2024Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Jun 25, 2026Updated 3 weeks ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆15Apr 24, 2026Updated 2 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Pooled Sequencing Analysis for Sex Signal☆15Sep 14, 2021Updated 4 years ago
- ☆39Aug 14, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆18Jan 29, 2025Updated last year
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 3 years ago
- A mosaic genome painting tool for plant genomes☆18May 6, 2026Updated 2 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- ☆30Jun 30, 2024Updated 2 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year