lidaof / g3dLinks
Genomics 3D Visualizer
☆13Updated last year
Alternatives and similar repositories for g3d
Users that are interested in g3d are comparing it to the libraries listed below
Sorting:
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- A GAN-based method for Enhancing Hi-C data☆32Updated 4 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A python package and a set of shell commands to handle GTF files☆50Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Updated 3 years ago
- A python package for showing JBrowse views☆26Updated last year
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- Splits fastq files evenly☆23Updated 5 years ago
- Poisson-based algorithm for stable inference of DNA Structure☆39Updated this week
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Updated 4 years ago
- SIP: Significant Interaction Peak caller☆15Updated 7 months ago
- RAGE-seq scripts☆18Updated 4 years ago