agalitsyna / avTADLinks
Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
☆10Updated 4 years ago
Alternatives and similar repositories for avTAD
Users that are interested in avTAD are comparing it to the libraries listed below
Sorting:
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 9 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- ☆13Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆15Updated last week
- ☆22Updated last year
- ☆16Updated 4 years ago
- ☆37Updated 5 years ago
- ☆14Updated 10 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- ☆11Updated 5 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆11Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Pan-3D genome analysis of soybean Hi-C data☆11Updated 2 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- Processing and plotting tools for genomics data☆20Updated last month
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆15Updated 3 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- ☆36Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- ☆21Updated 4 years ago