agalitsyna / avTADLinks
Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
☆10Updated 4 years ago
Alternatives and similar repositories for avTAD
Users that are interested in avTAD are comparing it to the libraries listed below
Sorting:
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- ☆37Updated 6 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- A Python implementation for BH-FDR and HiCCUPS☆53Updated 3 weeks ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- ☆13Updated 4 months ago
- Red-C data processing☆15Updated 2 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last month
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 4 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Updated 4 years ago
- Pore-C support☆53Updated 2 years ago
- ☆17Updated 5 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- Processing and plotting tools for genomics data☆21Updated this week
- Hi-C data analysis tool☆13Updated 8 years ago
- ☆47Updated 2 months ago
- ☆38Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Updated 7 months ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆28Updated 2 months ago
- ☆23Updated 5 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Updated 9 months ago