Alternatives and similar repositories for genomics-analysis-pipeline

Users that are interested in genomics-analysis-pipeline are comparing it to the libraries listed below

• Minglc / CisTrans-ECAS
  ☆10Updated last year
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆14Updated last year
• xuechantian / Plant-LncRNA-pipline
  ☆15Updated 7 months ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• Chenghong412 / sheep_introgression
  ☆11Updated 3 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆25Updated last month
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated 3 months ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆19Updated 6 years ago
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• LAILAB-CAU / update-Mo17
  ☆28Updated 2 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 7 years ago
• YinYuan-001 / muntjac_code
  ☆10Updated 4 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆16Updated 3 months ago
• glogsdon1 / sunk-based_assembly
  ☆16Updated 4 years ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆23Updated last year
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 4 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• xinkaitong / 1k-pig-genomes
  Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences
  ☆13Updated 2 years ago
• Yafei-Guo-coder / DumpNice
  Codes for Vmap1.1 and Vmap3
  ☆11Updated last week
• zlguu / Rice_Heterosis
  ☆16Updated 2 years ago
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆18Updated 4 months ago
• yukaiquan / biotools
  I often use some of the self-written programs.
  ☆15Updated 6 months ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 3 months ago
• quanc1989 / SV-ONT-Tibetan
  Characterization of Structural Variation in Chinese samples
  ☆18Updated 3 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆24Updated last year
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 5 years ago