Teichlab / MultiMAPLinks
MultiMAP for integration of single cell multi-omics
☆55Updated 2 years ago
Alternatives and similar repositories for MultiMAP
Users that are interested in MultiMAP are comparing it to the libraries listed below
Sorting:
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆22Updated 3 years ago
- Non-parametric density inference for single-cell analysis.☆74Updated 7 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ☆53Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- ☆26Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 6 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Multi-modal single cell analysis pipelines☆61Updated 2 weeks ago
- An R package for performing cell typing in SMI and other single cell data☆44Updated 7 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆64Updated 2 weeks ago
- Benchmark of GRNs using the GRETA pipeline☆30Updated this week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- Geometry-preserving random sampling☆95Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago