MultiMAP for integration of single cell multi-omics
☆55Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for MultiMAP
Users that are interested in MultiMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Memory-efficient single-cell analysis in Python. Stream RNA, ATAC, CITE-seq and multi-omics from local or remote Zarr stores, from laptop…☆124Updated this week
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆22Aug 17, 2026Updated last week
- Code repository for TCAT analyses☆16Sep 26, 2025Updated 11 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Clone of the Bioconductor repository for the scRNAseq package.☆30Oct 10, 2025Updated 10 months ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆71Jul 9, 2026Updated last month
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆44Oct 20, 2023Updated 2 years ago
- ☆14Apr 2, 2025Updated last year
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last month
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆202Jan 30, 2026Updated 7 months ago
- ☆22Jun 17, 2024Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- ☆22Aug 25, 2022Updated 4 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 8 months ago
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆68Jul 13, 2023Updated 3 years ago
- ☆10Jul 9, 2024Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- ☆49Jan 28, 2026Updated 7 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆508Jul 26, 2026Updated last month
- Toolbox for single-cell data analysis on sample level☆27Updated this week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scover☆23Nov 3, 2023Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆63May 23, 2022Updated 4 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated last week
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆39Aug 18, 2026Updated last week
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year