Teichlab / MultiMAPLinks
MultiMAP for integration of single cell multi-omics
☆56Updated last year
Alternatives and similar repositories for MultiMAP
Users that are interested in MultiMAP are comparing it to the libraries listed below
Sorting:
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated 3 weeks ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆72Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 10 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Information-based dimensionality reduction☆30Updated 7 months ago
- ☆26Updated last year
- Geometry-preserving random sampling☆89Updated 9 months ago
- ☆22Updated 2 years ago
- A python package for chromVAR☆28Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆58Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 6 months ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆25Updated 9 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated 2 years ago
- ☆35Updated 4 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆13Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆64Updated last week
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 11 months ago