KenLauLab / dropkick
Automated cell filtering for single-cell RNA sequencing data
☆24Updated last year
Related projects ⓘ
Alternatives and complementary repositories for dropkick
- ☆34Updated 6 months ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- ☆29Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Information-based dimensionality reduction☆29Updated 3 months ago
- ☆40Updated 3 weeks ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- RNA velocity validation☆23Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- ☆29Updated 8 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 5 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- Scripts for using scanpy☆31Updated 2 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated this week
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆55Updated 9 months ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Updated last year
- epigenome analysis to rank transcription factors☆13Updated 4 years ago