pachterlab / GSP_2019
Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."
☆11Updated 5 years ago
Alternatives and similar repositories for GSP_2019:
Users that are interested in GSP_2019 are comparing it to the libraries listed below
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 4 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Updated 2 years ago
- ☆12Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- scover☆23Updated last year
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated 2 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- RNA velocity validation☆22Updated 3 years ago
- ☆26Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆17Updated 11 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Version 2.1.0 released☆23Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Gene Expression Decomposition and Integration☆18Updated last month
- Pairwise Hierarchical Model☆17Updated 3 years ago
- ☆16Updated 3 years ago
- Comparison of single cell normalization strategies☆10Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year