Python implementation of Milo for differential abundance testing on KNN graph
☆84Feb 17, 2025Updated last year
Alternatives and similar repositories for milopy
Users that are interested in milopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated 3 weeks ago
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆14Nov 7, 2024Updated last year
- ☆47Jan 28, 2026Updated 4 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 6 months ago
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆40Updated this week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- Multimodal Data (.h5mu) implementation for Python☆122Jun 2, 2026Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆439Jun 2, 2026Updated last week
- ☆27May 22, 2025Updated last year
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 2 weeks ago
- ☆13Sep 3, 2025Updated 9 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 3 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A package to help convert different single-cell data formats to each other☆468Feb 20, 2026Updated 3 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆294May 26, 2026Updated 2 weeks ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆374Updated this week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆190Mar 27, 2025Updated last year
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆271Apr 26, 2026Updated last month
- muon is a multimodal omics Python framework☆269May 8, 2026Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆188Aug 12, 2025Updated 9 months ago
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 4 months ago
- Single-cell perturbation analysis☆322Jun 3, 2026Updated last week
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month
- CellRank: dynamics from multi-view single-cell data☆451Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- ☆69Jun 7, 2023Updated 3 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- ☆152Mar 20, 2026Updated 2 months ago
- Single-cell epigenomics analysis tools☆319May 19, 2026Updated 3 weeks ago
- ☆67Apr 22, 2026Updated last month
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago