Python implementation of Milo for differential abundance testing on KNN graph
☆87Feb 17, 2025Updated last year
Alternatives and similar repositories for milopy
Users that are interested in milopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated last year
- ☆49Jan 28, 2026Updated 9 months ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 8 months ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆75Jul 9, 2026Updated 3 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated 2 years ago
- ☆28May 22, 2025Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 11 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆465Oct 19, 2026Updated last week
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆208Jan 30, 2026Updated 9 months ago
- Non-parametric density inference for single-cell analysis.☆77Sep 24, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆93Mar 20, 2025Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 4 months ago
- ☆167Mar 20, 2026Updated 7 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆200Updated this week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆126Jan 22, 2024Updated 2 years ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 8 months ago
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- Benchmarking analysis of data integration tools☆435Apr 27, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Single-cell perturbation analysis☆355Updated this week
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆129Updated this week
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated last year
- Join subcellular Visium HD bins into cells☆147Sep 14, 2026Updated last month
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆203Aug 12, 2025Updated last year
- Single cell trajectory detection☆343Sep 23, 2026Updated last month
- Python package to perform enrichment analysis from omics data.☆300Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-omic velocity inference☆125Oct 23, 2024Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- ☆103Updated this week
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Updated this week
- Analysis framework for morphological profiling data☆14Updated this week
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- Single-cell epigenomics analysis tools☆329Sep 12, 2026Updated last month