emdann / milopy
Python implementation of Milo for differential abundance testing on KNN graph
☆64Updated last month
Alternatives and similar repositories for milopy:
Users that are interested in milopy are comparing it to the libraries listed below
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 10 months ago
- Single cell omics biology annotations☆51Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆71Updated 3 weeks ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 9 months ago
- R implementation of GeneTrajectory☆58Updated last year
- ☆51Updated last week
- R package for semi-supervised single-cell data integration☆81Updated 3 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 7 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆61Updated 2 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆104Updated 6 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated 11 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- ☆72Updated this week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆93Updated last month
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- A Bayesian model for compositional single-cell data analysis☆160Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- ☆46Updated 2 years ago
- ☆59Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year