hemberg-lab / scfindLinks
☆43Updated last year
Alternatives and similar repositories for scfind
Users that are interested in scfind are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆58Updated 11 months ago
- ☆35Updated 5 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆55Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Normalize CITEseq Data☆66Updated 4 months ago
- ☆17Updated 6 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- ☆55Updated 5 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago