hemberg-lab / scfindLinks
☆43Updated 2 years ago
Alternatives and similar repositories for scfind
Users that are interested in scfind are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆56Updated 5 years ago
- ☆34Updated 6 years ago
- scNMT-seq gastrulation☆42Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Normalize CITEseq Data☆67Updated 3 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆27Updated 6 years ago
- ☆43Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last week
- ☆44Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆59Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 5 years ago
- ☆26Updated 8 months ago
- ☆37Updated 3 weeks ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- ☆48Updated 2 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Clone identification from single-cell data☆61Updated 3 years ago