hemberg-lab / scfind
☆42Updated last year
Related projects ⓘ
Alternatives and complementary repositories for scfind
- ☆37Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆34Updated 7 months ago
- ☆34Updated 6 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- epigenome analysis to rank transcription factors☆30Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆33Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- ☆53Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆42Updated 8 months ago
- Clone identification from single-cell data☆59Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 2 weeks ago
- Geometry-preserving random sampling☆75Updated last week
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆25Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆37Updated 5 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- ☆31Updated 5 years ago
- ☆29Updated last year
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago