☆43Oct 20, 2023Updated 2 years ago
Alternatives and similar repositories for scfind
Users that are interested in scfind are comparing it to the libraries listed below
Sorting:
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- Single Cell Consensus Clustering with Speed☆20Dec 12, 2022Updated 3 years ago
- A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data.☆14Feb 3, 2019Updated 7 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 3 months ago
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 6 months ago
- MultiMAP for integration of single cell multi-omics☆55Nov 15, 2023Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Apr 8, 2023Updated 2 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- ☆11Feb 25, 2026Updated last week
- R interface to 'Gos'☆39Feb 23, 2023Updated 3 years ago
- An R-based interface for loom files☆67Jul 9, 2020Updated 5 years ago
- GTEx analysis scripts☆20Mar 14, 2017Updated 8 years ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 2 months ago
- ☆13Jun 6, 2024Updated last year
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 8 months ago
- Implementation of Selective Clustering Annotated using Modes of Projections☆11May 19, 2020Updated 5 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Jul 7, 2022Updated 3 years ago
- ☆31Apr 9, 2022Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Core utilities for single-cell RNA-seq☆12Apr 13, 2025Updated 10 months ago
- scID☆14Oct 21, 2021Updated 4 years ago
- MUMmer for HPC☆17Jan 7, 2013Updated 13 years ago
- supplementary tables and files☆10Oct 13, 2023Updated 2 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated last month
- UHCA☆11Jan 23, 2025Updated last year