hemberg-lab / scfind
☆42Updated last year
Alternatives and similar repositories for scfind:
Users that are interested in scfind are comparing it to the libraries listed below
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- ☆29Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Updated 3 years ago
- ☆33Updated 5 years ago
- ☆41Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Single-cell Case Control Analysis☆48Updated 5 months ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- ☆47Updated 3 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆20Updated 6 years ago
- ☆28Updated 6 years ago
- ☆35Updated last month
- Clone identification from single-cell data☆61Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago