SydneyBioX / scJointLinks
☆60Updated 2 years ago
Alternatives and similar repositories for scJoint
Users that are interested in scJoint are comparing it to the libraries listed below
Sorting:
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Predict RNA velocity through deep learning☆71Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated last month
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 2 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆113Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆133Updated 8 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- Multi-omic velocity inference☆111Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 8 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Spatial Cellular Estimator for Tumors☆58Updated 2 weeks ago
- ☆125Updated 3 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated last month
- ☆116Updated 4 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆87Updated 7 months ago
- ☆59Updated 4 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- ☆45Updated 3 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- Single cell omics biology annotations☆51Updated 6 months ago
- R implementation of GeneTrajectory☆65Updated last year
- inferring regulatory cellular dynamics☆58Updated last month
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year