SydneyBioX / scJointLinks
☆60Updated 2 years ago
Alternatives and similar repositories for scJoint
Users that are interested in scJoint are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆70Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆68Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last month
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- ☆59Updated 4 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 8 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆115Updated last year
- Multi-omic velocity inference☆111Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆107Updated last month
- ☆118Updated 5 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆143Updated 2 years ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆55Updated 5 months ago
- ☆126Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last month
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 5 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆34Updated 10 months ago
- ☆45Updated 3 months ago
- End-to-end analysis of spatial multi-omics data☆95Updated last week