SydneyBioX / scJointLinks
☆62Updated 2 years ago
Alternatives and similar repositories for scJoint
Users that are interested in scJoint are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated 2 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆81Updated 3 weeks ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- ☆129Updated 3 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- inferring regulatory cellular dynamics☆63Updated 3 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Updated 11 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- ☆62Updated 2 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆117Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Updated 8 months ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- ☆124Updated last week
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆76Updated 6 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆73Updated 4 years ago
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 2 weeks ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Single cell omics biology annotations☆53Updated 9 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆70Updated last year
- R implementation of GeneTrajectory☆68Updated last year