cytomining / CytoTableLinks
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
☆17Updated last week
Alternatives and similar repositories for CytoTable
Users that are interested in CytoTable are comparing it to the libraries listed below
Sorting:
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆13Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 4 months ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 9 months ago
- ☆97Updated last month
- Multi-modal single cell analysis pipelines☆62Updated 2 weeks ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Updated last month
- ☆62Updated last week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- Flow & mass cytometry analytics.☆58Updated last week
- Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).☆28Updated 2 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated last week
- A data-centric flow/mass cytometry automated analysis framework☆42Updated 11 months ago
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Updated last month
- a dataloader to work with large single cell datasets from lamindb☆32Updated last week
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated 2 years ago
- Access & manage biological ontologies.☆20Updated 2 weeks ago
- bioinformatics plotting and tools☆59Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆55Updated last month
- Python Flow Cytometry Calibration Library☆54Updated 8 months ago
- ☆61Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- The complete FlowSOM package known from R, now available in Python!☆25Updated last week
- Compendium of tools for the Imaging Platform☆15Updated 3 weeks ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago