cytomining / CytoTableLinks
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
☆10Updated this week
Alternatives and similar repositories for CytoTable
Users that are interested in CytoTable are comparing it to the libraries listed below
Sorting:
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆46Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆27Updated last week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- Evaluating batch correction methods for image-based cell profiling☆14Updated 5 months ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated last week
- Flow & mass cytometry analytics.☆50Updated this week
- Multi-modal single cell analysis pipelines☆58Updated last month
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- Python package for processing image-based profiling data☆117Updated this week
- ☆32Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆79Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Cell Painting and other pipelines from the Imaging Platform☆18Updated 4 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- Image-based Profiling Handbook☆11Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated last week
- ☆11Updated 6 years ago
- ☆28Updated 7 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated 2 weeks ago
- ☆46Updated this week
- bioinformatics plotting and tools☆57Updated last year
- Modeling complex perturbations with CellFlow☆49Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- File format for 96-well plate layouts.☆23Updated last year
- ☆62Updated this week
- ☆53Updated this week