Alternatives and similar repositories for CytoTable

Users that are interested in CytoTable are comparing it to the libraries listed below

• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆32Updated 3 weeks ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆50Updated this week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆50Updated 2 weeks ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆43Updated last month
• czi-ai / transcriptformer
  ☆73Updated this week
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• scverse / spatialdata-notebooks
  ☆57Updated this week
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆54Updated 2 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated last month
• metaspace2020 / metaspace-converter
  Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
  ☆11Updated last year
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 9 months ago
• NygenAnalytics / CyteType
  Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format
  ☆37Updated this week
• haniffalab / webatlas-app
  An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.
  ☆14Updated last year
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 5 months ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆42Updated 7 months ago
• Genentech / SIGnature
  SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …
  ☆17Updated last month
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆121Updated 2 weeks ago
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆22Updated this week
• nf-core / molkart
  A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
  ☆13Updated last month
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆51Updated 3 months ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆53Updated last week
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆46Updated 2 weeks ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated 10 months ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆48Updated 3 months ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 2 years ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated 2 weeks ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆29Updated this week
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆73Updated 3 weeks ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆43Updated 9 months ago