Alternatives and similar repositories for CytoTable:

Users that are interested in CytoTable are comparing it to the libraries listed below

• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated last week
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆44Updated this week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆113Updated this week
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆36Updated 3 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆19Updated last week
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆20Updated 4 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 3 months ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆12Updated 4 months ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆61Updated 2 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 11 months ago
• broadinstitute / monorepo
  Compendium of tools for the Imaging Platform
  ☆11Updated 2 weeks ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆77Updated last month
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆90Updated 2 weeks ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆76Updated 7 months ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆61Updated last week
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆88Updated last month
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆39Updated 3 months ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆21Updated 3 years ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 11 months ago
• beliveau-lab / PaintSHOP_pipeline
  A scalable machine learning pipeline for probe specificity prediction.
  ☆14Updated last year
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• shuxiaoc / maxfuse
  ☆51Updated 11 months ago
• theislab / prophet
  ☆30Updated this week
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆37Updated 3 weeks ago
• broadchenf / Slideseq
  ☆11Updated 6 years ago
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆17Updated 3 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 3 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆64Updated last week