LTLA / scRNAseqLinks
Clone of the Bioconductor repository for the scRNAseq package.
☆27Updated 4 months ago
Alternatives and similar repositories for scRNAseq
Users that are interested in scRNAseq are comparing it to the libraries listed below
Sorting:
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Collection of useful methods for single cell analysis☆14Updated 9 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆41Updated 4 years ago
- ☆37Updated 8 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 5 months ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- An analytics package for single cell data☆22Updated 3 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- ☆21Updated last year
- An R package for visualising cell-cell interactions☆44Updated 9 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- ☆29Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated 3 weeks ago
- Hierarchical classification of cells☆23Updated 10 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- ☆16Updated last year
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- ☆62Updated 2 months ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago