Clone of the Bioconductor repository for the scRNAseq package.
☆29Oct 10, 2025Updated 5 months ago
Alternatives and similar repositories for scRNAseq
Users that are interested in scRNAseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Nov 2, 2021Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 6 months ago
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- Examples used for useR! 2016 knitr tutorial☆15Jul 4, 2016Updated 9 years ago
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 5 months ago
- MultiMAP for integration of single cell multi-omics☆55Nov 15, 2023Updated 2 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated last month
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17Sep 13, 2024Updated last year
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- ☆11May 11, 2023Updated 2 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆53Jan 25, 2026Updated 2 months ago
- ☆11Aug 21, 2024Updated last year
- Helper script for bioconductor/bioconductor_docker☆13Mar 13, 2026Updated 3 weeks ago
- ☆21Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- Interactive benchmarking of ranking and assignment methods☆16Mar 20, 2026Updated 2 weeks ago
- Visualization of scRNA-seq data.☆99Nov 10, 2022Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆40Nov 14, 2022Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- ☆19Mar 8, 2026Updated last month
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Jun 1, 2023Updated 2 years ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains all code used for the Human Lung Cell Atlas project.☆59Aug 21, 2023Updated 2 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 7 months ago
- An R Package for general purpose TIFF file I/O which plays nice with ImageJ☆17Jan 26, 2026Updated 2 months ago
- mosaicMPI: mosaic multi-resolution program integration☆12Mar 30, 2026Updated last week
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago