Bayesian Segmentation of Spatial Transcriptomics Data
☆219Oct 2, 2026Updated last month
Alternatives and similar repositories for Baysor
Users that are interested in Baysor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probabilistic cell segmentation for in situ spatial transcriptomics☆198Oct 30, 2026Updated last week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆298Updated this week
- Spatial Single Cell Analysis in Python☆612Updated this week
- ☆15Feb 28, 2022Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Oct 26, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆38Sep 21, 2021Updated 5 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆116Oct 16, 2026Updated 3 weeks ago
- Static plotting for spatialdata☆89Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated last year
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆17Apr 30, 2026Updated 6 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆466Updated this week
- Spatiotemporal modeling of spatial transcriptomics☆347Feb 25, 2026Updated 8 months ago
- Spatial alignment of single cell transcriptomic data.☆375Jul 1, 2025Updated last year
- Code used to benchmark Xenium☆88Apr 10, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 3 years ago
- Spatial omics analysis toolbox☆395Updated this week
- ☆28Oct 12, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆492Updated this week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆262Updated this week
- ☆108Oct 28, 2026Updated last week
- An open and interoperable data framework for spatial omics data☆406Updated this week
- ☆67Sep 9, 2026Updated last month
- Package for the analysis of Transcripts outside segmented cells in ST data☆32Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Spatial Single-Cell Analysis Toolkit☆116Oct 26, 2026Updated last week
- ☆47Jun 1, 2026Updated 5 months ago
- ☆73Jan 18, 2023Updated 3 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆116Updated this week
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆91Oct 12, 2026Updated 3 weeks ago
- Single-cell spatial omics analysis that makes you happy!☆87Updated this week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆204Updated this week
- Join subcellular Visium HD bins into cells☆148Sep 14, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Sep 23, 2026Updated last month
- Profile purification of single-cell spatial transcriptomics data☆69Jun 29, 2026Updated 4 months ago
- Integrated pipeline for multiplexed image analysis☆110Sep 18, 2026Updated last month
- starfish: unified pipelines for image-based transcriptomics☆252Updated this week
- BANKSY: spatial clustering☆172Oct 28, 2026Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- multimodal whole slide image registration in a graph structure☆105Jul 4, 2024Updated 2 years ago