Alternatives and similar repositories for Baysor

Users that are interested in Baysor are comparing it to the libraries listed below

• yuqiyuqitan / SPACEc
  ☆58Updated last month
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆146Updated 3 weeks ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆94Updated 2 years ago
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆256Updated last week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆107Updated last week
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆73Updated 2 years ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• rajewsky-lab / openst
  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
  ☆110Updated 6 months ago
• BodenmillerGroup / ImcSegmentationPipeline
  A pixel classification based multiplexed image segmentation pipeline
  ☆103Updated 2 years ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆51Updated this week
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆39Updated last year
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆347Updated 6 months ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 7 months ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆98Updated 10 months ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆147Updated last month
• HiDiHlabs / ssam
  ☆27Updated last year
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆101Updated last week
• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆132Updated 2 months ago
• jian-shu-lab / Bering
  ☆25Updated 9 months ago
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆67Updated last month
• seqscope / ficture
  ☆42Updated 2 months ago
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆70Updated last year
• fish-quant / ComSeg
  comseg
  ☆24Updated 11 months ago
• drieslab / Giotto
  Spatial omics analysis toolbox
  ☆355Updated this week
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆73Updated 5 years ago
• scverse / spatialdata-notebooks
  ☆64Updated this week
• CaiGroup / seqFISH-PLUS
  ☆53Updated 4 years ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆35Updated last year
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆82Updated last month