kharchenkolab / BaysorLinks
Bayesian Segmentation of Spatial Transcriptomics Data
☆184Updated 7 months ago
Alternatives and similar repositories for Baysor
Users that are interested in Baysor are comparing it to the libraries listed below
Sorting:
- ☆47Updated last month
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆212Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆129Updated last month
- Probabilistic cell segmentation for in situ spatial transcriptomics☆112Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆85Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆103Updated last month
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- Join subcellular Visium HD bins into cells☆113Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆89Updated 5 months ago
- A pixel classification based multiplexed image segmentation pipeline☆99Updated last year
- ☆15Updated 3 years ago
- ☆27Updated 9 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 2 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆64Updated 9 months ago
- Spatial alignment of single cell transcriptomic data.☆313Updated last month
- Single-cell spatial proteomics analysis that makes you happy!☆34Updated this week
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆74Updated last week
- ☆123Updated last year
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- ☆36Updated this week
- Code used to benchmark Xenium☆64Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated 3 months ago
- Spatial omics analysis toolbox☆312Updated last week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆48Updated 3 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆81Updated 2 weeks ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 4 years ago