andrewcharlesjones / spatial-alignmentLinks
Alignment of spatial genomics data using deep Gaussian processes
☆32Updated 3 years ago
Alternatives and similar repositories for spatial-alignment
Users that are interested in spatial-alignment are comparing it to the libraries listed below
Sorting:
- Test genes for Spatial Variation☆15Updated last year
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- spatial transcriptome, single cell☆73Updated 2 years ago
- ☆47Updated 5 months ago
- ☆60Updated last year
- Invariant Representation learning☆18Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 6 months ago
- ☆22Updated 3 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- CAST package☆42Updated last year
- Single-cell multi-omics integration using Optimal Transport☆48Updated 5 months ago
- ☆30Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated 2 years ago
- Simple scVI implementation☆12Updated last month
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Updated last month
- ☆27Updated 6 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated 2 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆17Updated last year
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- ☆19Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆62Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last week
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 5 months ago