Alternatives and similar repositories for spatial-alignment

Users that are interested in spatial-alignment are comparing it to the libraries listed below

• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated last year
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆62Updated 2 years ago
• bioFAM / FISHFactor
  A probabilistic factor model for spatial transcriptomics data with subcellular resolution
  ☆25Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 5 months ago
• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆28Updated 4 years ago
• zcang / SpaOTsc
  ☆45Updated 5 months ago
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• suinleelab / contrastiveVI
  ☆60Updated last year
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆23Updated 10 months ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆17Updated last year
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆69Updated 2 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• BiomedicalMachineLearning / Spacell
  ☆27Updated 6 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 3 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• scverse / simple-scvi
  Simple scVI implementation
  ☆12Updated 3 weeks ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆34Updated 2 years ago
• CaiGroup / seqFISH-PLUS
  ☆53Updated 4 years ago
• theislab / scTab
  ☆61Updated last year
• almaan / eggplant
  ☆22Updated 3 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 10 months ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆17Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 4 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year