JCVenterInstitute / FRmatch
Cell type matching in single-cell RNA-sequencing data using FR-Match
☆19Updated last year
Related projects: ⓘ
- Individual level Differential Expression Analysis for Single cells☆22Updated last year
- .h5mu files interface for Seurat☆24Updated 9 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 8 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆27Updated 3 months ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Algorithms for single-cell analysis☆28Updated 3 years ago
- ☆29Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆31Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 11 months ago
- ☆26Updated this week
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆53Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 3 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated last month
- ☆19Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 6 months ago
- CellRank's reproducibility repository.☆14Updated 2 years ago
- Information-based dimensionality reduction☆29Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆36Updated 2 years ago
- ☆21Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆13Updated last week
- ☆25Updated 2 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Cellular Genetics Informatics Notebooks☆20Updated 2 years ago