Alternatives and similar repositories for FRmatch

Users that are interested in FRmatch are comparing it to the libraries listed below

• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated last month
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆66Updated 4 months ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 7 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆26Updated 3 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆22Updated last year
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• lcmmichielsen / scHPL
  ☆37Updated 9 months ago
• BatadaLab / scID
  scID
  ☆13Updated 4 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆53Updated 3 weeks ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 6 months ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 6 years ago
• satijalab / azimuth-references
  ☆26Updated 7 months ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• maggiecrow / MetaNeighbor
  ☆48Updated 7 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated last week
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆86Updated 3 weeks ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆45Updated 7 months ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆24Updated 5 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆44Updated 3 years ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆21Updated 2 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago