JCVenterInstitute / FRmatchLinks
Cell type matching in single-cell RNA-sequencing data using FR-Match
☆19Updated last month
Alternatives and similar repositories for FRmatch
Users that are interested in FRmatch are comparing it to the libraries listed below
Sorting:
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- ☆25Updated 5 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆43Updated 4 years ago
- ☆37Updated 7 months ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- ☆29Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 3 weeks ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated 2 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated last week
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Information-based dimensionality reduction☆29Updated 10 months ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Updated 3 months ago
- scID☆13Updated 4 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆32Updated 5 years ago
- An R package for performing cell typing in SMI and other single cell data☆42Updated 5 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Clone identification from single-cell data☆61Updated 2 years ago