aristoteleo / dynamo-releaseLinks
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
☆472Updated 2 weeks ago
Alternatives and similar repositories for dynamo-release
Users that are interested in dynamo-release are comparing it to the libraries listed below
Sorting:
- CellRank: dynamics from multi-view single-cell data☆402Updated last month
- This is the alpha version of the CellOracle package☆388Updated 9 months ago
- Reference mapping for single-cell genomics☆386Updated 3 weeks ago
- Benchmarking analysis of data integration tools☆388Updated last month
- A tool for semi-automatic cell type classification☆414Updated 2 weeks ago
- Scanpy Tutorials.☆225Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆408Updated 2 months ago
- Single cell perturbation prediction☆322Updated 10 months ago
- RNA Velocity generalized through dynamical modeling☆470Updated 8 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆384Updated 2 weeks ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆430Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆380Updated 2 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆440Updated 4 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆427Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆548Updated 4 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆243Updated this week
- Spatiotemporal modeling of spatial transcriptomics☆318Updated 2 weeks ago
- scripts and notebooks from sanbomics☆446Updated 11 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆239Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆581Updated 2 weeks ago
- muon is a multimodal omics Python framework☆252Updated last week
- ☆360Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆602Updated 2 weeks ago
- Panoramic stitching of single cell data☆291Updated 3 months ago
- A package to help convert different single-cell data formats to each other☆444Updated last year
- Single-cell perturbation analysis☆205Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆405Updated 3 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆220Updated 4 months ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆373Updated last year
- Spatial alignment of single cell transcriptomic data.☆331Updated 3 months ago