Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
☆510Jul 26, 2026Updated last month
Alternatives and similar repositories for dynamo-release
Users that are interested in dynamo-release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorials on using latest dynamo package☆27Jul 1, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆456Sep 16, 2026Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆344Feb 25, 2026Updated 6 months ago
- This is the alpha version of the CellOracle package☆501Apr 30, 2026Updated 4 months ago
- RNA Velocity generalized through dynamical modeling☆512Feb 25, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference mapping for single-cell genomics☆411Jun 26, 2026Updated 2 months ago
- Predict RNA velocity through deep learning☆73Dec 12, 2023Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,695Updated this week
- Multi-omic velocity inference☆121Oct 23, 2024Updated last year
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆448Aug 25, 2026Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆680Jun 1, 2026Updated 3 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆639Jun 26, 2025Updated last year
- A tool for semi-automatic cell type classification☆504May 22, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 7 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆132Aug 3, 2026Updated last month
- Fast, sensitive and accurate integration of single-cell data with Harmony☆672Jun 5, 2026Updated 3 months ago
- ☆363Dec 9, 2021Updated 4 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆479Feb 9, 2026Updated 7 months ago
- ☆29Dec 25, 2023Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆423Sep 12, 2026Updated last week
- trajectory inference☆109Jan 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single cell trajectory detection☆336Jul 15, 2026Updated 2 months ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,565Updated this week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆461Aug 31, 2026Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆130Sep 4, 2026Updated 2 weeks ago
- ☆134Nov 17, 2023Updated 2 years ago
- RNA velocity estimation in Python☆177Oct 7, 2025Updated 11 months ago
- RNA velocity estimation in R☆196Sep 14, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single-cell perturbation analysis☆346Updated this week
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 5 years ago
- Benchmarking analysis of data integration tools☆432Apr 27, 2026Updated 4 months ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆284Sep 16, 2026Updated last week
- Non-parametric density inference for single-cell analysis.☆76Jul 28, 2026Updated last month
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,860Sep 7, 2026Updated 2 weeks ago