Package for the analysis of Transcripts outside segmented cells in ST data
☆28Mar 30, 2026Updated last week
Alternatives and similar repositories for troutpy
Users that are interested in troutpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆65Updated this week
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- A public MuSpAn page for community discussions and issue reporting.☆20Mar 8, 2026Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆108Mar 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Feb 27, 2026Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆33Mar 20, 2026Updated 3 weeks ago
- Spatial omics analysis and visualization library☆24Updated this week
- Python API and Jupyter widget for Vitessce☆65Apr 4, 2026Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Feb 6, 2026Updated 2 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆31Aug 20, 2025Updated 7 months ago
- ☆14Mar 28, 2025Updated last year
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆23Updated this week
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- single-cell decorrelated module networks☆31Aug 24, 2024Updated last year
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 4 months ago
- CAST package☆43Oct 26, 2024Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆68Jul 2, 2025Updated 9 months ago
- An introduction to OME-Zarr for big bioimaging data☆24Mar 30, 2026Updated last week
- A template for Python projects using cookiecutter☆12Mar 30, 2026Updated last week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 6 months ago
- Analysis of Single Cell Expression data in Julia☆26Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- EasyFigAssembler simplifies the assembly of publication-quality scientific figures. It helps free scientists from technical burdens, so w…☆30Dec 28, 2025Updated 3 months ago
- ☆17Sep 13, 2024Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆88Mar 16, 2026Updated 3 weeks ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Single-cell spatial omics analysis that makes you happy!☆55Updated this week
- Identification of persistent local patterns in spatial omics data☆14May 6, 2025Updated 11 months ago
- ☆153Jan 30, 2026Updated 2 months ago
- List of Spatial Transcriptomics related Tools organized per category☆136Mar 23, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆13Jun 6, 2024Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆34Nov 18, 2024Updated last year
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 2 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Code for EpiMap data browser☆14Jun 4, 2024Updated last year
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month