const-ae / transformGamPoi
Variance stabilizing transformation for Gamma Poisson distributed data
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for transformGamPoi
- Flexible, probablistic metrics for quality control of scRNA-seq data☆18Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- kallisto index tag extractor☆20Updated 5 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated last week
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆13Updated last week
- R package for Flexible dot plots☆26Updated 2 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- Collection of useful methods for single cell analysis☆14Updated 2 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆10Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆19Updated 4 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆13Updated last year
- Gene Expression Decomposition and Integration☆15Updated 3 months ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 4 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 4 years ago
- ☆14Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- CellAnn☆12Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆27Updated last month
- ☆19Updated 2 weeks ago
- An analytics package for single cell data☆21Updated 2 years ago
- A gene expression signature scoring Python package.☆10Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Code used for muti cellular factor analysis☆12Updated 11 months ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago