☆23Aug 25, 2022Updated 4 years ago
Alternatives and similar repositories for eggplant
Users that are interested in eggplant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆54Jun 8, 2022Updated 4 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆104Apr 25, 2026Updated 5 months ago
- A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.☆26Nov 17, 2022Updated 3 years ago
- Tutorials for Squidpy☆35Jul 10, 2026Updated 3 months ago
- ☆36Dec 22, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Aug 22, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- ☆105May 4, 2026Updated 5 months ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆15May 27, 2023Updated 3 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated last month
- maze: match visualizer☆10Oct 11, 2021Updated 5 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆16Apr 13, 2021Updated 5 years ago
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- ☆16Mar 24, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A software suite for Probe Design and Proximity Detection for targeted chromosome conformation capture applications☆13Oct 5, 2026Updated last week
- Single-cell differential expression☆19Updated this week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆74Jul 9, 2026Updated 3 months ago
- polyApipe☆25Feb 10, 2025Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Library for analysis of Molecular Pixelation data in R (Pixelgen Technologies AB)☆10Updated this week
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆55Nov 15, 2023Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Aug 7, 2021Updated 5 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 9 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆57Jan 20, 2025Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated 3 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell Case Control Analysis☆59Updated this week
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆110Dec 11, 2023Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆19Apr 4, 2022Updated 4 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago