Clone of the Bioconductor repository for the SingleR package.
☆202Apr 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for SingleR
Users that are interested in SingleR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆336Jul 28, 2020Updated 5 years ago
- Collection of cell type reference datasets.☆64May 31, 2024Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆323Nov 1, 2022Updated 3 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆256Jan 10, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods for detecting doublets in single-cell sequencing data☆246Feb 12, 2026Updated 2 months ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆328Apr 23, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 10 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆240May 8, 2023Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- Gene set variation analysis☆240Updated this week
- ☆447Apr 23, 2026Updated last week
- Easy single cell analysis platform for enrichment☆219Apr 3, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R toolkit for single cell genomics☆2,715Apr 22, 2026Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆545Mar 21, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆428Feb 4, 2026Updated 2 months ago
- A toolkit for single-cell immune profiling☆367Updated this week
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 5 months ago
- Community-provided extensions to Seurat☆361Feb 17, 2026Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆226Apr 11, 2026Updated 2 weeks ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Apr 11, 2023Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆663Nov 14, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆778Jan 6, 2024Updated 2 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 5 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆642Apr 21, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆145Nov 5, 2024Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆99Nov 24, 2020Updated 5 years ago
- ☆294Nov 10, 2024Updated last year
- Visualization of Functional Enrichment Result☆258Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆316Dec 19, 2025Updated 4 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Apr 23, 2025Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆472Mar 13, 2026Updated last month
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 3 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago