Alternatives and similar repositories for SingleR

Users that are interested in SingleR are comparing it to the libraries listed below

• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 3 weeks ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆216Updated last month
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆203Updated 9 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆209Updated last month
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆215Updated last month
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆311Updated 3 years ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆204Updated last year
• huayc09 / SeuratExtend
  ☆202Updated last month
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆151Updated 10 months ago
• neurorestore / Libra
  ☆181Updated 8 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆231Updated last month
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆247Updated 3 weeks ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆237Updated 2 years ago
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆211Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆144Updated last year
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆287Updated this week
• dviraran / xCell
  Cell types enrichment analysis
  ☆206Updated last year
• navinlabcode / copykat
  ☆268Updated 3 months ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆194Updated 2 years ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆320Updated 5 years ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆170Updated 2 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆185Updated last year
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆260Updated 3 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆133Updated last year
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆185Updated 4 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆180Updated 3 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆206Updated last week
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆229Updated last month