Clone of the Bioconductor repository for the SingleR package.
☆199Updated this week
Alternatives and similar repositories for SingleR
Users that are interested in SingleR are comparing it to the libraries listed below
Sorting:
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆322Jul 28, 2020Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Collection of cell type reference datasets.☆64May 31, 2024Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆214Dec 10, 2025Updated 2 months ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- Gene set variation analysis☆231Updated this week
- A toolkit for single-cell immune profiling☆363Feb 19, 2026Updated last week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated 3 weeks ago
- Easy single cell analysis platform for enrichment☆214Jan 4, 2026Updated last month
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated last week
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 3 months ago
- ☆440Jan 8, 2026Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- R toolkit for single cell genomics☆2,650Feb 20, 2026Updated last week
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated last week
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 3 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆764Jan 6, 2024Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆651Nov 14, 2025Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- ☆285Nov 10, 2024Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆621Oct 10, 2025Updated 4 months ago
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Visualization of Functional Enrichment Result☆256Updated this week
- High dimensional weighted gene co-expression network analysis☆465Feb 13, 2026Updated 2 weeks ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Apr 11, 2023Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 4 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated 10 months ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago