SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
☆74Dec 9, 2021Updated 4 years ago
Alternatives and similar repositories for SCINA
Users that are interested in SCINA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆15Jul 5, 2023Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆623Mar 4, 2026Updated 3 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆193Mar 9, 2024Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆236Apr 3, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11Jul 8, 2024Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 3 years ago
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 2 weeks ago
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆17Feb 6, 2026Updated 4 months ago
- Clone of the Bioconductor repository for the SingleR package.☆202May 21, 2026Updated 2 weeks ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Jul 15, 2020Updated 5 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆474Jun 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- ☆364Dec 9, 2021Updated 4 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- ☆302Nov 10, 2024Updated last year
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 5 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆244May 11, 2026Updated last month
- ☆288Oct 13, 2025Updated 7 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A package for automated processing of single cell RNA-seq data in cancer☆117Aug 27, 2025Updated 9 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jun 19, 2025Updated 11 months ago
- binned motif enrichment analysis and visualisation☆47Apr 29, 2026Updated last month
- ☆19Feb 23, 2022Updated 4 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Updated this week
- Cell types enrichment analysis☆210May 27, 2024Updated 2 years ago
- ☆63Feb 21, 2026Updated 3 months ago