Alternatives and similar repositories for SCINA

Users that are interested in SCINA are comparing it to the libraries listed below

• Coolgenome / iTALK
  ☆61Updated 5 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆104Updated last month
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆94Updated 5 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆67Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last month
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 3 months ago
• cssmillie / ulcerative_colitis
  ☆62Updated 4 years ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆105Updated 2 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆81Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆71Updated 6 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆73Updated 9 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆82Updated 2 weeks ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆49Updated 3 years ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆59Updated 2 years ago
• TheHumphreysLab / plot1cell
  ☆107Updated 2 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆111Updated last month
• rpolicastro / scProportionTest
  ☆64Updated last year
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 5 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆81Updated 9 months ago
• YutingPKU / SingleCell-Multiomics
  ☆67Updated 2 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆60Updated 6 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 4 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 4 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆106Updated 2 years ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆30Updated last year
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆93Updated 3 years ago
• KChen-lab / METAFlux
  ☆66Updated 11 months ago