Alternatives and similar repositories for SCINA:

Users that are interested in SCINA are comparing it to the libraries listed below

• Coolgenome / iTALK
  ☆59Updated 5 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆93Updated last year
• TheHumphreysLab / plot1cell
  ☆104Updated 2 weeks ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆65Updated last year
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆106Updated last month
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 3 weeks ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆96Updated last year
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆98Updated last week
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆71Updated 7 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆73Updated 4 years ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆72Updated 6 years ago
• liulab-dfci / RIMA_pipeline
  ☆78Updated last year
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆78Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last year
• YutingPKU / SingleCell-Multiomics
  ☆64Updated 2 years ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆93Updated 3 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆77Updated 2 years ago
• rpolicastro / scProportionTest
  ☆61Updated last year
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 6 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆105Updated 2 weeks ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆60Updated 4 years ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆61Updated 3 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆79Updated last year
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆72Updated 6 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆46Updated 3 years ago