☆10Mar 12, 2023Updated 3 years ago
Alternatives and similar repositories for gsdensity
Users that are interested in gsdensity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jul 8, 2024Updated 2 years ago
- ☆11Jul 9, 2024Updated 2 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 10 months ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆23Oct 8, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆40Jan 13, 2026Updated 9 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- SANTO: a coarse-to-fine stitching and alignment method for spatial omics☆15Jun 27, 2024Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆18Oct 10, 2026Updated last week
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆15Aug 22, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq☆11Jun 6, 2024Updated 2 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Spatial Transcriptome Image and Expression integration enables single cell level spatial data analysis☆13Sep 7, 2024Updated 2 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 4 months ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13May 13, 2026Updated 5 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 3 months ago
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- single-cell Contamination Detection and Correction☆19Jan 15, 2025Updated last year
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated 2 years ago
- Some scripts for T-LGLL single cell RNA-seq project☆11Nov 19, 2021Updated 4 years ago
- R package for Conditional Random Fields☆20Oct 22, 2025Updated 11 months ago
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated last year
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 7 months ago
- ☆17Sep 13, 2024Updated 2 years ago
- Geometric single cell deconvolution☆21Sep 7, 2026Updated last month
- ☆47Nov 26, 2025Updated 10 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago