SCA-IRCM / SingleCellSignalRLinks
R package for Bioconductor submission
☆37Updated 2 years ago
Alternatives and similar repositories for SingleCellSignalR
Users that are interested in SingleCellSignalR are comparing it to the libraries listed below
Sorting:
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆50Updated 5 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 4 months ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- ☆60Updated 2 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated this week
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆18Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆44Updated last year
- Normalize CITEseq Data☆66Updated last week
- ☆27Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago