SCA-IRCM / SingleCellSignalRLinks
R package for Bioconductor submission
☆35Updated 2 years ago
Alternatives and similar repositories for SingleCellSignalR
Users that are interested in SingleCellSignalR are comparing it to the libraries listed below
Sorting:
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last month
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆31Updated 2 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆29Updated 2 years ago
- Single-cell Case Control Analysis☆51Updated 9 months ago
- sharing interactive single cell gene expression visualizations from Seurat☆10Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ☆41Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆14Updated last year
- ☆57Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- An R package designed to demultiplex cell hashing data☆31Updated 3 weeks ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- Cell type pipes for R☆51Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆30Updated 3 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 8 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year