SCA-IRCM / SingleCellSignalRLinks
R package for Bioconductor submission
☆34Updated 2 years ago
Alternatives and similar repositories for SingleCellSignalR
Users that are interested in SingleCellSignalR are comparing it to the libraries listed below
Sorting:
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆13Updated 10 months ago
- ☆18Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- ☆13Updated 7 years ago
- ☆14Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆24Updated 11 months ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated last week
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 4 months ago