Alternatives and similar repositories for scDataviz

Users that are interested in scDataviz are comparing it to the libraries listed below

• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆49Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 2 months ago
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 4 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆59Updated 6 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 7 years ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆65Updated this week
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆42Updated 4 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆41Updated 4 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated 2 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆46Updated 3 months ago
• neuhausi / single-cell-viewer
  R package to visualize scRNA sequencing data.
  ☆20Updated 4 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆37Updated 2 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆78Updated last month
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆81Updated 7 months ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated 2 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆47Updated 6 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 4 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆76Updated 2 years ago