Alternatives and similar repositories for scDataviz

Users that are interested in scDataviz are comparing it to the libraries listed below

• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆38Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆47Updated 2 years ago
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 4 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• elimereu / matchSCore2
  ☆55Updated 5 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated 5 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 4 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated last month
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆65Updated 10 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆60Updated last year
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 7 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆42Updated 4 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• neuhausi / single-cell-viewer
  R package to visualize scRNA sequencing data.
  ☆20Updated 3 years ago
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆46Updated 2 months ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated 5 months ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• niaid / covid19-time-resolved
  This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…
  ☆15Updated 4 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 5 months ago
• BernsteinLab / aml2019
  The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …
  ☆44Updated 5 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated last month
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆68Updated last year
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆80Updated 6 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆42Updated 2 years ago